Mercurial > repos > iuc > poretools_yield_plot
comparison poretools_yield_plot.xml @ 2:c5c5a3e84989 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author | iuc |
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date | Fri, 27 Sep 2024 07:46:01 +0000 |
parents | ca22d8497db5 |
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1:ca22d8497db5 | 2:c5c5a3e84989 |
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1 <?xml version="1.0"?> | 1 <tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.1" profile="@PROFILE@"> |
2 <tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.1"> | |
3 <description>of sequencing yield over time</description> | 2 <description>of sequencing yield over time</description> |
4 <macros> | 3 <macros> |
5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
6 </macros> | 5 </macros> |
6 <expand macro="bio_tools"/> | |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <command detect_errors="aggressive"> | 8 <command detect_errors="aggressive"> |
9 <![CDATA[ | 9 <![CDATA[ |
10 @MPLBACKEND@ | 10 @MPLBACKEND@ |
11 poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type | 11 poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type |
16 && mv plot.$extension '$output' | 16 && mv plot.$extension '$output' |
17 ]]> | 17 ]]> |
18 </command> | 18 </command> |
19 <inputs> | 19 <inputs> |
20 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> | 20 <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> |
21 <param name="plot_type" argument="--plot-type" type="select" label="Plot reads or base pairs"> | 21 <param argument="--plot-type" type="select" label="Plot reads or base pairs"> |
22 <option value="reads">Reads</option> | 22 <option value="reads">Reads</option> |
23 <option value="basepairs">Base pairs</option> | 23 <option value="basepairs">Base pairs</option> |
24 </param> | 24 </param> |
25 <param argument="--skip" type="integer" min="1" value="1" label="Plot only every nth point" help="Increases performance at the cost of resolution." /> | 25 <param argument="--skip" type="integer" min="1" value="1" label="Plot only every nth point" help="Increases performance at the cost of resolution." /> |
26 <expand macro="plot_options" /> | 26 <expand macro="plot_options" /> |