Mercurial > repos > iuc > poretools_yield_plot
view poretools_yield_plot.xml @ 0:64a83664b814 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit aee00b3755588862ab34c199c28578706c004a34
author | iuc |
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date | Tue, 19 Dec 2017 14:54:20 -0500 |
parents | |
children | ca22d8497db5 |
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<?xml version="1.0"?> <tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.0"> <description>of sequencing yield over time</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="aggressive"> <![CDATA[ poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type $theme_bw #if $skip != '0': --skip $skip #end if && mv plot.$extension '$output' ]]> </command> <inputs> <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> <param name="plot_type" argument="--plot-type" type="select" label="Plot reads or base pairs"> <option value="reads">Reads</option> <option value="basepairs">Base pairs</option> </param> <param argument="--skip" type="integer" value="0" label="Plot only every nth point" help="Increases performance at the cost of resolution." /> <expand macro="plot_options" /> </inputs> <outputs> <expand macro="image_output" /> </outputs> <tests> <test> <expand macro="test_input" /> <param name="extension" value="png" /> <param name="plot_type" value="reads" /> <output name="output" file="poretools-yield-plot-out1.png" ftype="png" lines_diff="301" /> </test> <test> <expand macro="test_input" /> <param name="extension" value="svg" /> <param name="plot_type" value="basepairs" /> <output name="output" file="poretools-yield-plot-out2.svg" ftype="svg" lines_diff="40" /> </test> </tests> <help> Create a collector’s curve reflecting the sequencing yield over time. </help> <expand macro="citations" /> </tool>