Mercurial > repos > iuc > poretools_yield_plot
view poretools_yield_plot.xml @ 2:c5c5a3e84989 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/poretools commit 506782d1e671505617ff539e6811fcdcc2c02cd5
author | iuc |
---|---|
date | Fri, 27 Sep 2024 07:46:01 +0000 |
parents | ca22d8497db5 |
children |
line wrap: on
line source
<tool id="poretools_yield_plot" name="Collector’s curve" version="@VERSION@.1" profile="@PROFILE@"> <description>of sequencing yield over time</description> <macros> <import>macros.xml</import> </macros> <expand macro="bio_tools"/> <expand macro="requirements"/> <command detect_errors="aggressive"> <![CDATA[ @MPLBACKEND@ poretools yield_plot '$input' --saveas plot.$extension --plot-type $plot_type $theme_bw #if $skip != '0': --skip $skip #end if && mv plot.$extension '$output' ]]> </command> <inputs> <param name="input" type="data" format="h5,fast5.tar,fast5.tar.gz,fast5.tar.bz2" label="Input fast5 or archive of fast5 files" /> <param argument="--plot-type" type="select" label="Plot reads or base pairs"> <option value="reads">Reads</option> <option value="basepairs">Base pairs</option> </param> <param argument="--skip" type="integer" min="1" value="1" label="Plot only every nth point" help="Increases performance at the cost of resolution." /> <expand macro="plot_options" /> </inputs> <outputs> <expand macro="image_output" /> </outputs> <tests> <test> <expand macro="test_input" /> <param name="extension" value="png" /> <param name="plot_type" value="reads" /> <output name="output" file="poretools-yield-plot-out1.png" ftype="png" compare="sim_size" /> </test> <test> <expand macro="test_input" /> <param name="extension" value="svg" /> <param name="plot_type" value="basepairs" /> <output name="output" file="poretools-yield-plot-out2.svg" ftype="svg" lines_diff="50" /> </test> </tests> <help> Create a collector’s curve reflecting the sequencing yield over time. </help> <expand macro="citations" /> </tool>