Mercurial > repos > iuc > presto_assemblepairs

diff presto_assemblepairs.xml @ 4:af855eb44091 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 1beb51cefbe9e6edc8930c7ae0421f28e7bb93c8
author iuc
date Fri, 04 Oct 2024 09:04:05 +0000
parents 540fcbdac82e
children
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--- a/presto_assemblepairs.xml	Sat Sep 25 18:33:43 2021 +0000
+++ b/presto_assemblepairs.xml	Fri Oct 04 09:04:05 2024 +0000
@@ -1,6 +1,5 @@
 <tool id="presto_assemblepairs" name="pRESTO AssemblePairs" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
     <description>Assembles paired-end reads into a single sequence.</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>presto_macros.xml</import>
         <xml name="align-params">
@@ -23,6 +22,7 @@
             </param>
         </xml>
     </macros>
+    <expand macro="bio_tools"/>
     
     <expand macro="requirements"/>
     
@@ -123,7 +123,7 @@
     </outputs>
     
     <tests>
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="join"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>
@@ -135,7 +135,7 @@
             <output name="fastq_out" file="presto_assemblepairs_test_join_out.fastq" sort="true"/>
         </test>
         
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="align"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>
@@ -147,7 +147,7 @@
             <output name="fastq_out" file="presto_assemblepairs_test_align_out.fastq" sort="true"/>
         </test>
         
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="reference"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>
@@ -160,7 +160,7 @@
             <output name="fastq_out" file="presto_assemblepairs_test_reference_out.fastq" sort="true"/>
         </test>
         
-        <test>
+        <test expect_num_outputs="1">
             <param  name="command" value="sequential"/>
             <param  name="r1_in" value="presto_assemblepairs_test_r1_in.fastq"/>
             <param  name="r2_in" value="presto_assemblepairs_test_r2_in.fastq"/>