Mercurial > repos > iuc > presto_buildconsensus

diff test-data/presto_parseheaders_test_rename_out.fastq @ 0:7c7df98db5a9 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 5d4da3eb59439ce5b1eea211b4ad1d47807d7acb
author iuc
date Wed, 30 May 2018 15:37:30 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/presto_parseheaders_test_rename_out.fastq	Wed May 30 15:37:30 2018 -0400
@@ -0,0 +1,40 @@
+@CTTGCTTATGATTCCAG|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGL,Human-IGLC-2-InternalC
+GAGCTCTGGGGAGTCTGCACCATGGCTTGGACCCCACTCCTCTTCCTCACCCTCCTCCTCCACTGCACAGGGTCTCTCTCCCAGCTTGCGCTGACTCAATCGCCCTCTGCCTCTGCCTCCCTGGGCGCCTCGGTCACGCTCACCTGCACTCTGAGCAGTGGGCACAGCAGCTACGCCATCGCATGGCATCAGCAGCAGCCACAGNANGGCCCTCGGTATCTGATGAAGGTTAACAGTGATGGCAGTCACAGCAAGGGGGACGGGATCCCTGATCGCTTCTCTGGCTCCACCTCTGGGGCTGAGCACTACCTCACCATCTCCAGCCTCCAGTCTGAGGATGAGGCTGACTATTACTGTCAGACCTGGGCTGGCACTTGGGTATTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCG
++
+GGGG8EFFGGFGGGGGGAGGGGGGGGGGFEEFGGDGGC@,CEFGGGGGGGCEEFDAFFFGGGGGGGGGGGGCGFCFFDCGG8FGGGEFGGGC:FGFGGFGGDFCFGF8AFGGGFCFG:EFC8@EE,BCE==>8@E>>BC>8CGGGFFCF9FEC9-F<:<@;<;?CF>>,8:8DCDE7C5DC@>@DC@9,FA6DD:GFFFGFFF>*1*GD>3GGECCGEGECGEGEFFGCCGGGGCDGCFF?GFGDEGCDCFGFDGGEECFCFFGDCGFFCF@C<GGGDFGGGGGGGGCDGGGGGEFGGGFFGGGFGGFFGGGGGFECF<CEFEGFFDFGCGGCGGGGFGGGFGGFGGGGGGGGGGGGGGGGGCFEGGGGFGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFFFEGG
+@ATCTTTGCGGCTGGTTA|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGK,Human-IGKC-IGKJ-InternalC
+GTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCAACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGTCCCTGACCGATTCAGTGGCAGCGGGTCTGGGACAGATTTCACTCTCACCATCAGCAGCCTGCAGGCTGAAGATGTGGCAGTTTATTACTGTCAGCAATATTATAGTACTCCTCCCACTTTTGGCCAGGGGACCAAGCTGGAGATCAAACGAA
++
+GGGGGGGGGG7CFGGGGGGGEFGFFFGFGGGGGGFFGF8FFEGGGGGGGGFGFGCGFGGGGGGGGGCCFFGGGGGFGGGG9<AFGFG>EFGGFGGGGCFFFGFFGCFE,F>CBFDEGFGGEFGGCFGGGGFGEGGGGGGDDFGGCFGFGGGGFCC>@FGFFGFDCGGGFGC1FGGGGGGGGGGGEGEDEGGFEECFCEFCG?GGFCEF@FFFDFFA:0<EG=FBE?F8FCFEFGGFEA<GFGFEC4,DF7E?9EFFACGFEGGCGGEFEDGGGGF@?GGGGGGGGGFCGDCGGGGGGGGFFGGGGGGGGGFB78GGGGGGCFCF8FCAGFGFGGGGGGGGGGGGGDGGGDGGFF
+@GGGACTCCAAAATTAAT|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGL,Human-IGLC-2-InternalC
+GAGCTTCAGCTGTGGGTAGAGAAGACAGGACTCAGGACAATCTCCAGCATGGCCAGCTTCCCTCTCCTCCTCACCCTCCTCACTCACTGTGCAGGGTCCTGGGCCCAGTCTGTGCTGACTCAGCCACCCTCAGCGTCTGGGACCCCCGGGCAGAGGGTCACCATCTCTTGTTCTGGAAGCAGCNCCAACATCGGAAGTAATAATGTAAACTGGTACCAGCAACTCCCCGGAACGGCCCCCAAGCTCCTCATCCATAGCAATACTCNGCGGCCCTCNGGGGTCCCTGACCGATTCTCTGGCTCCAAGTCTGGCACCTCAGCCTCCCTGGCCATCAGTGGGCTCCAGTCTGAGGATGAGGCTGATTATTACTGTGCTACATGGGATGACAGCCTGAATGGTTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCG
++
+GGGGFGGGGGGGEGFGGGGGGGGFGGGFFFGGGGGGGGGGGGGGGGGGGCFGGGGGGGGGGGGFGGEGFGFFGGGGDGGGGCGCFFFCGGGGG9EC?FFGGG7F@E@EEFGF?=FFA?ABFFEEGGGGGGGFGGGGEGCCFGGGGGGGG+CC6F+;+ACFFFF7CCGGDEG7DFGG>F6E?FG*AFCEF>4G?CFGFG6BEC+:?7=CC78>?=CEGGFFFFGGGGGECFCC:>CDDGC<+:;ECGGGFGGGFGFDEC7GC<;-8*GGEDGGGFC*E87GGGBFCECGFFCGGFFFGFGGGGGCGFGFGGGGFGFGGDGGGGGGGGGGFGGFFGGFGGGGGGGGGGFGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGFFGGGGGGGGGGGGGGGGFCGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGG
+@CCTTGTCCGAGATGTCT|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGK,Human-IGKC-IGKJ-InternalC
+GTCAGTCTCAGTCAGGACACAGCATGGACATGAGGGTCCCCGCTCAGCTCCTGGGGCTCCTGCTACTCTGGCTCCGAGGTGCCAGATGTGACATCCAGATGACCCAGTCTCCATCATCCCTGTCTGCGTCTGTAGGAGACAGAGTCACCATCGCTTGCCGGGCAAGTCAGAGCGTTANCAGCTCTGTAAATTGGTATCAGCTGAAGCCAGGGAANNCCCCTAANCTCCTGATCTATGCTGCATCCAGTTTGCACAGTGNCGTCCCGTCAAGGNTCAGTGGGAGTGGATCTGGGACAGATTTCACTCTCACCATCAGCAGTCTGCAACCTGAAGATTTTGCAACTTACTTCTGTCACCAGACTTACAATCCCCCGCTCGCTTTCGGCGGAGGGACCAAGGTGGAGATCAAACGAA
++
+GGGGGGGGGGGGFFGGCC@CGGGGGFGGGDFGDFGGGGGGGFDFCE?CCEFGFGGEGEGGEFGGGFGGGGGFF8CC:FFEGGGGFGGGFGFAFEFGGCGGAFGEEEGGGE9FFGF@EGC:FDG8EFGE@CEGFGGE93>8BEFA>7C,>9DFGADFCCGEDF>7;=?GGDC<84;E=*=CCGFCFDFECEC6<CC76C>1?GGF@58C=04+9=**G@E:=>=*?<,?,?,,EFFFGFFB<?,FCD>,?,FGF>>:11*<AGEGFGFFC@+3*FDBFD8GGFDFGGGGGFFFAEFF9GFGFFEF<GFCFFGFFGGEE?GEGGGGGGGGFEEA<GGGGGCFDGF<FGGGGFCF9GGGGGGGFEEFGFEFGGCFF:GGGFFC7GGGGFGGGGGGGGFFGFGGGGGGDFGGGGEFEE
+@TTAGCTACATGTAATTG|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGK,Human-IGKC-IGKJ-InternalC
+ACTGATCAGGACTCCTCAGTTCACCTTCTCACAATGAGGCTCCCTGCTCAGCTCCTGGGGCTGCTAATGCACTGGGTCCCAGGATGCAGTGGGGATGTTGTGATGACTCAGTATCCACTCTCACTGCCCGTCACCCTTGGGCAGACGGCCTCCATCTCCTGCAGGTCTAGTCAAAGCNTCATATACAGTGATGNNANCAACTACTTGNGCTGGTTTNNNNNNNNNNNNNNNNNNNCTCCAANGCGNCTAATATATAANGTTTCTAACCNGGNCTCTGGGGTCCCAGACAGATTCAGCGGCAGTGGTACAGGCACGGATTTCACACTGAAAATCAGTAGGGTGGGGGCTGAGGATGTTGGCATTTATTACTGCATGCAAACTACACCCTGTCCTTACACTTCTGGCCAGGGGACCAAGCTCCAGATCAAACGAA
++
+GGGGFDCEFGGGGFDFGGGGGFFDFFEEE<EFGEC<FGF,FF,CFFGF@9EE9<8C<EGDCFGCEEECAB,:,,BF=E8<E@FB=B85,,BFDCCEFFCF=FBFFFD9,AEF=@F,44A8,9,C=FE@8FF@EE9,+4,,,A8++A+88@CFDED9=FFEGFGF4B@7EAGG5,@DF*@7,,@,,7:;C,53@**3(@ADE695=9@*7@CGGF8F###"##"####""######EFEC<5)+@,*,,AFC9DD=,3*,DC>173,>1*=3*AFB6++>GFFA,,C5BAF9FECDDF?,=<:,:?55E:+C=B7,,,FAGGGF?FGFE9CFAFFD8EFF@CGFF,DGFFFFFC9,,6,EFFFEE<C,,E9ECFE9C9E<FF@B68,F6<,<FEC@C9GFED;,,CFC,6<FFF<6,;C;,,FFGFBC9@@EFE
+@CTTGATAGGAATGAATA|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGLC-1-InternalC,Human-TRB
+AGCCTGGGCCTCAGGAAGCAGCATCGGGGGTGCCGCAGCCATGGCCTGGACCGCTCTCCTTCTGAGCCTCCTTGCTCACTTTACAGGTTCTGTGGCCTCCTATGAGCTGACTCAGCCACTCTCAGTGTCAGTGGCCCTGGGACAGACGGCCAAGATTACCTGTGGGGGAAACAACATTGGAAGTAAAAGTGTGTACTGGTTCCAGCAGAAGCCAGGCCAGGCCCCTGTGCTGATCATCTATAGGGATATCCACCGGCCCTCTGGGATCCCTGACCGATTCTCTGGCTCCAACTCGGGGAACACGGCCACCCTGATTATCAGCAGAGCCCAAGCCGGGGATGAGGCTGACTATTCCTGTCAGGTGTGGGACAGCAGCACTGTGGTCTTCGGAACTGGGACCAGGGTCACCGTCCTAAGTCAGCCCAAGGCCAACCCCACTGTCACT
++
+GGGGGGGGGGGGGGGGGGGGGGGGGGGGGEGGDGEGGGGGGGGGGGGGGGGGGGEGGGGGGGGFEGGGGGGGGGGGGGGGGGGGGGFGGGGGGFFGGGGGGGGGGGGGGGGGGFGGGGGGGGGFGGGGGGDGGF7DFGGG7FGGGGGGEGGGC8FEFGGGGC77GFEGEGGDGGGGGGGFFGFGGGFGGGGFFGGFFGFFCFGGFDF;CGGGGFF4C=>FGGGFFGFGGGGGGGFGECGGGGDGGGGGGGG@GGGGGGFEGGGGGEGGGGGEGGGGGGGFFFGEFGGGGGGGGEFGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
+@ATTAGTTCATAAATTCC|CONSCOUNT=2,2|SEQORIENT=F|PRIMER=Human-IGK,Human-IGKC-IGKJ-InternalC
+NGGAACTGCTCAGTTAGGACCCAGAGGGAACCATGGAAGCNCCAGCTCAGCTTCTCTTCCTCCTGCTACTCTGGCTCCCAGATACCACCGGAGACATTGTGTTGACACAGTCTCCAGCCACCCTGTCTTTGTCTCCAGGGGAAAGAGTCACCCTCTCCTGCAGGGCCAGTCAGAGTATTAGCAGCTACTTAGGCTGGTACCAACAGAAACCTGGCCAGNCTCCCAGGCTCCTCATCNATGATGCANCCAATAGGGCCACTGGCANCCCAGCCANGTTCAGTGGCAGTGGGTCTGGGACANNCTTCACTCTCACCANCAGCAGCCTAGAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCACCGTAGCGAGTGGCCTCTCACTTTCGGCGGAGGGACCAGGGTGGAGATCAAACGAA
++
+!ffflchRi[_bclkmm^eRYclc^`Qeilejlmaglcl]!`Rebll^ghbklglgm_blmilbcjhe[^jbRRhlj`km^d^lhYjiikmdlilmjcg`_X^OPRXjiihliiRRelmikkm]RellRabkki^^dQ`LUUOWPehdddkdefk[illkmkETNP^Qfh[idOFNIMLEdMfkk^hTIW[TNIPXBEEIHOLa[IIIHIHEFEIIAI!IIIIIlkbYdjeggibZ%R\jc]khf%fSff[Y\bil_jmhhiif!OcigRRg]%bR_illdjlcllc\QlgRee[_`R`!!Rgee_`RRlljQfl!mjlhRRReeckbcilkmlhRele_lmlmmlkjlilbjci_ml`]lfRkmmll^ili]i^_R\RmlfQmmkmml^Rfmmmmmmmimimmmmmmmmmmmmmml
+@CGCATATATCTGCAAAA|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGHA,Human-IGHA-InternalC
+GGAGAGAGGAGCCTTAGCCCTGGATTCCAAGGCCTATCCACTTGGTGATCAGCACTGAGCACCGAGGATTCACCATGGAACTGGGGCTCCGCTGGGTTTTCCTTGTTGCTATTTTAGAAGGTGTCCAGTGTGAGGTGCAGCTGGTGGAGTCTGGGGGAGGCCTGGTCAAGCCTGGGGGGTCCCTGAGNCTCTCNTGTNCAGCCTCTGGNTTNNCNTTCANTGACTATNNNANNANCNGGGNCCGCCAGGCTCCNGGGAAGGGGCTGGAGTGGGTCTCATNCATTGATNCTAGTAGAAGTTACATATACTATGCAGACTCAGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGACGACACGGCTGTGTATTACTGTTCTCGAGAATATAGCAGTGGCTGGCATGCTTTTGATATGTGGGGCCAAGGGACAATGGTCACCGTCTCTTCAGCATCCCCGACCAGCCCCAAGGTCTTCCCG
++
+GGFGGGCFGGGGGGGGGGGGGGGDFCFEGEFCEGGGGGGGGGGGFGGFCEAEFGGGGCEFFGGGGGGGGGGGGFFFGGFCGGGGG=FEGGGGDGECE7FFGGGEFGFGGGGGGGFGGCGFFGGGFGGFGGGG9,8>=DCC@D8,>8+6D>EFGC6BCCEDEGC5:ECGDGFFFFGG555:CCCF6E7*2:=+0*?4:*:>GFFFGCCC*27**2*20<7*0+2++37***9**A*:*98C(25FF:??@?771%F?CGF>;ECEGFE>B>C3?@:9EF=*:@GFD>:*@:CFC<+E7FA+FGFGF9C7FFC=?FGCC7CGFC:F5DGGGGFGGCFGGFD66DCD;FGGGGGGGGGGGGFGGCGFFDFAFFCF;;GGGGGFFDGGGGGGGGGGDGGFGGGFEEGGGGGGGGGGGGGGGGGGEDGGGGEGFFGGGGGGGGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGF?GGFEGEGGDGGGGGGGGGGGGGGGGGGGGGGGG
+@CGATGTAATCTTAGCTG|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGL,Human-IGLC-2-InternalC
+GAGCCTCAGCAGAGCTCTGGGGAGTCTGCACCATGGCTTGGACCCCACTCCTCTTCCTCACCCTCCTCCTCCACTGCACAGGGTCTCTCTCCCAGCTTGTGGTGACTCACTCGCCCTCTGATTCTGCCTCCCTGGGAGCCTCGGTCAAGTTCACCTGCACTCTGAGCAGTGGGCACAGCAGCTACGCCATCGCATGGCATCAGCAGCAGCCAGANAAGGGCCCTCGCTACTTGATGACGGTTAAGAGTGATGGCAGCCACATCAAGGGGGACGGGATCCCTGATCGCTTCTCAGGCTCCAGCTCTGGGGCTGANCGCTACCTCACCATCTCCAGCCTCCAGTCTGAGGATGAGGCTGACTATTACTGTCAGACCTGGGGCACTGGCATTGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCG
++
+EGGEGGGFCFGGGGGFGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGFGGA<FFGGGGGEFGGGGGGGFGDGGGGGCGGEEFF@FGFGFFGGDGGGGGEGEED5FDFF,?FD7F@F:E?FEF;FEFGFGGGGGDCDEGCGDEG8FFDE9@DFG9=BGCCF8D;ACF7@D77DGF8/:DCD>:@CEE>EG76F><C6C>7C>FGGEDF>6DG>A%CGEGEGEC7CFCGGGEEC79ECCGFC<D4C-GF?FCFDEF=C;?CFC6GGECGGGFGFGGEGC,GF@F1<CFFCGGGFGFGGGFCF>GGGGGGFF<7F*CGGFECFCFCFEFCF<GGGGGGFCGGGGF=9FFGGGGFCGF=99GGGGFFGGDFGGGGGGGCFEGGGGGGGF8GDGGGGGGGGGGGGGDGFGFGFGGGGGGGGGGGCF,GGGGGGGDGFGGGGGGGGGGDGGGG
+@ACTCGTGCTAATCCTTC|CONSCOUNT=1,1|SEQORIENT=F|PRIMER=Human-IGL,Human-IGLC-2-InternalC
+GAGCTCAGGAAGCAGAGCCTGGAGCATCTCCACTATGGCCTGGGCTCCACTACTTCTCACCCTCCTCGCTCACTGCACAGATTCTTGGGCCAATTTTATGCTGACTCAGCCCCACTCTGTGTCGGGGTCTCCGGGGAAGACGGTAACCATCTCCTGCACCGGCAGCAGTGGCAGCATTGCCAGCAACTATGTGCAGTGGTACCAGCAGCGCCCGGGCAGTGCCCCCACCACTGTGATCTATGAGGATAACGAAAGACCCTCTGGGGTCCCTGATCGGTTCTCTGGCTCCATCGACAGCTCCTCCAACTCTGCCTCCCTCACCATCTCTGGACTGAAGACTGAGGACGAGGCTGACTACTACTGTCAGTCTTATGATGCCGGCAGGGGGGTGTTCGGCGGAGGGACCAAGCTGACCGTCCTAGGTCAGCCCAAGGCTGCCCCCTCG
++
+GGGGGGGGGGGGGGGGGGGGGGGGGGFGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCEEGGGGGF9F9FGGGGAFGGFGGGCGGGGGGGGGGGGGGGDGGGGGDEDGGGGGGGECCCFFGGGGDE7FFCG7BCCCGGGGFBFGGGGGGFEEEEEGG?FGGGGD@DEGGFGGGGFD>>7FGGFGFF>GGFGGGF<GGGG?GGGGGGGFEGGGFGGC5EFGGGGGGGGGGFGGGGGGGGFGGFFGCEGFFEGGGGGGGGGGGGCEFFFFGGGGGGGGGGGGGGGGGGGGGGGGGGGFGGGGGGGGGGFFGFGGGGGGFGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG