Mercurial > repos > iuc > presto_filterseq
changeset 1:85d929281435 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit a42c43c1528ae7b7efe2c5ef848681d574df0405"
| author | iuc |
|---|---|
| date | Tue, 22 Jun 2021 16:38:18 +0000 |
| parents | 7b102129b1e8 |
| children | 33a09d40751f |
| files | presto_filterseq.xml presto_macros.xml test-data/presto_maskprimers_with_barcode_test_score_out.fastq test-data/presto_maskprimers_without_barcode_test_score_out.fastq |
| diffstat | 4 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/presto_filterseq.xml Wed May 30 15:36:41 2018 -0400 +++ b/presto_filterseq.xml Tue Jun 22 16:38:18 2021 +0000 @@ -119,7 +119,7 @@ <help><![CDATA[ Filters and/or masks reads based on length, quality, missing bases and repeats. -See the `pRESTO online help <@PRESTO_URL_BASE@/FilterSeq.html>`_ for more information. +See the `pRESTO online help <@PRESTO_BASE_URL@/en/stable>`_ for more information. @HELP_NOTE@ ]]></help>
--- a/presto_macros.xml Wed May 30 15:36:41 2018 -0400 +++ b/presto_macros.xml Tue Jun 22 16:38:18 2021 +0000 @@ -8,7 +8,7 @@ <xml name="requirements"> <requirements> - <requirement type="package" version="0.5.4">presto</requirement> + <requirement type="package" version="0.6.2">presto</requirement> </requirements> </xml> @@ -36,7 +36,7 @@ <validator type="regex" message="Value may include alphanumeric characters, underscores and spaces.">[A-Za-z0-9_ ]+</validator> </xml> - <token name="@PRESTO_URL_BASE@">https://presto.readthedocs.io/en/latest/tools</token> + <token name="@PRESTO_URL_BASE@">https://presto.readthedocs.io</token> <!-- When modifying this file ensure that the version here matches the version above in requirements. --> <token name="@PRESTO_VERSION@">0.5.4</token> @@ -55,4 +55,4 @@ - Steps that take a single set of fastq inputs can only take a single file * The ``--outdir`` and ``--outname`` options are not supported; output files are named directly ]]></token> -</macros> \ No newline at end of file +</macros>
--- a/test-data/presto_maskprimers_with_barcode_test_score_out.fastq Wed May 30 15:36:41 2018 -0400 +++ b/test-data/presto_maskprimers_with_barcode_test_score_out.fastq Tue Jun 22 16:38:18 2021 +0000 @@ -1,4 +1,4 @@ -@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 2:N:0:CTATAC|SEQORIENT=F|PRIMER=TS-shift3|BARCODE=ATCTTTGCGGCTGGTTA +@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 2:N:0:CTATAC|PRIMER=TS-shift3|BARCODE=ATCTTTGCGGCTGGTTA GTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCCACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGCCCCTGACCGATTCAGTGGCCGCGGGTCTGGGACAGAGTTCACTCTCAACATCAGCAGCATGCAGTCGGAAGA + GGGGGGGGGG7CFGGGGGGGEFGFFFGFGGGGGGFFGF8FFEGGGGGGGGFGFGCGFGGGGGGGGGCCFFGGGGGFGGGG9<AFGFGFEFDG?EFGGCFFFGFF9CFE,E+ABE@EGFEGEFGGCFGGGGEGCGGGGGGDDFGGCFGDF,>D+44,@3DCFGC8CGGGFGC9@CGGGGGD8CGG?C79,1556C*00BC5D*/=EC5C4C<EDEC+:0<*:*19)8>*);7ECF*;>*0:9+<AC#############################
--- a/test-data/presto_maskprimers_without_barcode_test_score_out.fastq Wed May 30 15:36:41 2018 -0400 +++ b/test-data/presto_maskprimers_without_barcode_test_score_out.fastq Tue Jun 22 16:38:18 2021 +0000 @@ -1,4 +1,4 @@ -@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 1:N:0:CTATAC|SEQORIENT=F|PRIMER=Human-IGK +@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 1:N:0:CTATAC|PRIMER=Human-IGK TTCGTTTGATCTCCAGCTTGGTCCCCTGGCCAAAAGTGGGAGGAGTACTATAATATTGCTGACAGTAATAAACTGCCACATCTTCAGCCTGCAGGCTGCTGATGGTGAGAGTGAAATCTGTCCCAGACCCGCTGCCACTGAATCGGTCAGGGACCCCGGATTCCCGGGTAGATGCCCAGTAACTGAGCAGCTTAGGAGGCTGTCCTGGTTTCTGCTGGTACCAAGCTAAGTAGTTCTTATTGTTGGAGCTGTATAAAACACTCTGGTTGGACTTGCAGTT + FFGGDGGGDGGGGGGGGGGGGGFGFGACF8FCFCGGGGGG87BFGGGGGGGGGFFGGGGGGGGCDGCFGGGGGGGGG?@FGGGGDGFGGGCGGGFGCAFFE9?E9FD,4,EFGFGGAEFGGFCFCF8F?EBFEGE8,,AFFCFFF@FECFGGGGCFECFCEEFGGEDEGE>FGGGGCCFGGF,@EDFFF6DFEDFGF8>CCFGGGGFFF9:@C79=6@<=;EFF,=,5C6,+,>CGD7:DF?CFF*0;CG4@+;>C7CDGGFFG7>+*2))**04C4?CC