Mercurial > repos > iuc > presto_parselog
view presto_parselog.xml @ 0:488cd05be723 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit 5d4da3eb59439ce5b1eea211b4ad1d47807d7acb
author | iuc |
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date | Wed, 30 May 2018 15:35:52 -0400 |
parents | |
children | 0e4fdaef4e2f |
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<tool id="presto_parselog" name="pRESTO ParseLog" version="@PRESTO_VERSION@"> <description>Create tabular report from pRESTO log file</description> <macros> <import>presto_macros.xml</import> </macros> <expand macro="requirements"/> <version_command>ParseLog.py --version</version_command> <command detect_errors="exit_code"><![CDATA[ ParseLog.py -l '$log_file' -f $fields --outdir=. --outname=tmp ]]></command> <inputs> <param argument="-l" name="log_file" type="data" format="txt" label="pRESTO log file" help="Detailed log file generated from a pRESTO tool."/> <param argument="-f" name="fields" type="text" label="Field(s)" help="Space-separated list of fields to extract."> <expand macro="text-regex-validator"/> </param> </inputs> <outputs> <data name="output" format="tsv" from_work_dir="tmp_table.tab"/> </outputs> <tests> <test> <param name="log_file" value="presto_parselog_test_in.txt"/> <param name="fields" value="ID QUALITY"/> <output name="output" file="presto_parselog_test_out.txt" sort="true"/> </test> </tests> <help><![CDATA[ Creates tab-separated tabular reports from pRESTO detailed log files. See the `pRESTO online help <@PRESTO_URL_BASE@/ParseLog.html>`_ for more information. @HELP_NOTE@ ]]></help> <expand macro="citations" /> </tool>