# HG changeset patch
# User iuc
# Date 1624379618 0
# Node ID c3bf9c466305910dc110aa1b49f66976745bacde
# Parent 0b103d43a2c708b4793a8fd27f0c87ee37f3dabf
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/presto commit a42c43c1528ae7b7efe2c5ef848681d574df0405"
diff -r 0b103d43a2c7 -r c3bf9c466305 presto_macros.xml
--- a/presto_macros.xml Wed May 30 15:35:32 2018 -0400
+++ b/presto_macros.xml Tue Jun 22 16:33:38 2021 +0000
@@ -8,7 +8,7 @@
- presto
+ presto
@@ -36,7 +36,7 @@
[A-Za-z0-9_ ]+
- https://presto.readthedocs.io/en/latest/tools
+ https://presto.readthedocs.io
0.5.4
@@ -55,4 +55,4 @@
- Steps that take a single set of fastq inputs can only take a single file
* The ``--outdir`` and ``--outname`` options are not supported; output files are named directly
]]>
-
\ No newline at end of file
+
diff -r 0b103d43a2c7 -r c3bf9c466305 presto_partition.xml
--- a/presto_partition.xml Wed May 30 15:35:32 2018 -0400
+++ b/presto_partition.xml Tue Jun 22 16:33:38 2021 +0000
@@ -45,7 +45,7 @@
annotation field to yield one file which contains all sequences with the field value less than the provided threshold and
a second file with all sequences with the field value greater than or equal to the threshold.
-See the `pRESTO online help <@PRESTO_URL_BASE@/SplitSeq.html>`_ for more information.
+See the `pRESTO online help <@PRESTO_BASE_URL@/en/stable>`_ for more information.
@HELP_NOTE@
]]>
diff -r 0b103d43a2c7 -r c3bf9c466305 test-data/presto_maskprimers_with_barcode_test_score_out.fastq
--- a/test-data/presto_maskprimers_with_barcode_test_score_out.fastq Wed May 30 15:35:32 2018 -0400
+++ b/test-data/presto_maskprimers_with_barcode_test_score_out.fastq Tue Jun 22 16:33:38 2021 +0000
@@ -1,4 +1,4 @@
-@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 2:N:0:CTATAC|SEQORIENT=F|PRIMER=TS-shift3|BARCODE=ATCTTTGCGGCTGGTTA
+@M01873:M01873:000000000-B9G3J:1:2116:20980:12498 2:N:0:CTATAC|PRIMER=TS-shift3|BARCODE=ATCTTTGCGGCTGGTTA
GTGCCTACGGGGACATCGTGATGACCCAGTCTCCAGACTCCCTGGCTGTGTCTCTGGGCGAGAGGGCCACCATCAACTGCAAGTCCAGCCAGAGTGTTTTATACAGCTCCCACAATAAGAACTACTTAGCTTGGTACCAGCAGAAACCAGGACAGCCTCCTAAGCTGCTCATTTACTGGGCATCTACCCGGGAATCCGGGGCCCCTGACCGATTCAGTGGCCGCGGGTCTGGGACAGAGTTCACTCTCAACATCAGCAGCATGCAGTCGGAAGA
+
GGGGGGGGGG7CFGGGGGGGEFGFFFGFGGGGGGFFGF8FFEGGGGGGGGFGFGCGFGGGGGGGGGCCFFGGGGGFGGGG9D+44,@3DCFGC8CGGGFGC9@CGGGGGD8CGG?C79,1556C*00BC5D*/=EC5C4C*);7ECF*;>*0:9+FGGGGCCFGGF,@EDFFF6DFEDFGF8>CCFGGGGFFF9:@C79=6@<=;EFF,=,5C6,+,>CGD7:DF?CFF*0;CG4@+;>C7CDGGFFG7>+*2))**04C4?CC