comparison pretext_map.xml @ 13:bd07b0d0f568 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/pretext commit 6eb4fd6a6e9e8bc6cc489ba260f8baf438e565f5

12:056f86469460

<tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01">
    <description>converts SAM or BAM files into genome contact maps</description>
    <macros>
        <token name="@TOOL_VERSION@">0.2.3</token>
        <token name="@VERSION_SUFFIX@">0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement>
        <requirement type="package" version="1.14">samtools</requirement>
    </requirements>
    <version_command>PretextMap --version</version_command>
    <command detect_errors="exit_code"><![CDATA[
        #if $input.is_of_type("bam"):
            samtools view -h '${input}' |
        #else
            cat '${input}' |

13:bd07b0d0f568

<tool id="pretext_map" name="PretextMap" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>converts SAM or BAM files into genome contact maps</description>
    <macros>
        <token name="@TOOL_VERSION@">0.2.4</token>
        <token name="@VERSION_SUFFIX@">0</token>
        <token name="@PROFILE@">25.0</token>
    </macros>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">pretextmap</requirement>
        <requirement type="package" version="1.23">samtools</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        #if $input.is_of_type("bam"):
            samtools view -h '${input}' |
        #else
            cat '${input}' |