Mercurial > repos > iuc > prinseq

annotate tool_dependencies.xml @ 0:ba78b984a9eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
author iuc
date Tue, 31 May 2016 07:43:42 -0400
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ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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1 <?xml version="1.0"?>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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2 <tool_dependency>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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3 <package name="perl" version="5.18.1">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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4 <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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5 </package>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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6 <!--<package name="perl-json" version="2.90">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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7 <repository name="package_perl_json_2_90" owner="iuc" prior_installation_required="True" />
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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8 </package>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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9 <package name="perl-cairo" version="1.106">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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10 <repository name="package_perl_cairo_1_106" owner="iuc" prior_installation_required="True" />
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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11 </package>-->
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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12 <package name="prinseq" version="0.20.4">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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13 <install version="1.0">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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14 <actions>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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15 <action sha256sum="9b5e0dce3b7f02f09e1cc7e8a2dd77c0b133e5e35529d570ee901f53ebfeb56f" type="download_by_url">http://downloads.sourceforge.net/project/prinseq/standalone/prinseq-lite-0.20.4.tar.gz</action>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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16 <action type="move_file">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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17 <source>prinseq-lite.pl</source>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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18 <destination>$INSTALL_DIR</destination>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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19 </action>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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20 <action type="chmod"><file mode="755">$INSTALL_DIR/prinseq-lite.pl</file></action>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
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21
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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22 <action type="move_file">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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23 <source>prinseq-graphs-noPCA.pl</source>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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24 <destination>$INSTALL_DIR</destination>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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25 </action>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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26 <action type="chmod"><file mode="755">$INSTALL_DIR/prinseq-graphs-noPCA.pl</file></action>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
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27
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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28 <action type="set_environment">
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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29 <environment_variable action="set_to" name="PRINSEQ_DIR">$INSTALL_DIR/</environment_variable>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
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30 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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31 </action>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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32 </actions>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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33 </install>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
iuc
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34 </package>
ba78b984a9eb planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
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35 </tool_dependency>