Mercurial > repos > iuc > prinseq

diff tool_dependencies.xml @ 0:ba78b984a9eb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit dd85747b08272b72c7161de9b18d19598bb49de1
author iuc
date Tue, 31 May 2016 07:43:42 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue May 31 07:43:42 2016 -0400
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="perl" version="5.18.1">
+        <repository changeset_revision="35f117d7396b" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
+    </package>
+    <!--<package name="perl-json" version="2.90">
+        <repository name="package_perl_json_2_90" owner="iuc"  prior_installation_required="True" />
+    </package>
+    <package name="perl-cairo" version="1.106">
+        <repository name="package_perl_cairo_1_106" owner="iuc"  prior_installation_required="True" />
+    </package>-->
+    <package name="prinseq" version="0.20.4">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="9b5e0dce3b7f02f09e1cc7e8a2dd77c0b133e5e35529d570ee901f53ebfeb56f" type="download_by_url">http://downloads.sourceforge.net/project/prinseq/standalone/prinseq-lite-0.20.4.tar.gz</action>
+                <action type="move_file">
+                    <source>prinseq-lite.pl</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="chmod"><file mode="755">$INSTALL_DIR/prinseq-lite.pl</file></action>
+                
+                <action type="move_file">
+                    <source>prinseq-graphs-noPCA.pl</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="chmod"><file mode="755">$INSTALL_DIR/prinseq-graphs-noPCA.pl</file></action>
+
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="PRINSEQ_DIR">$INSTALL_DIR/</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/</environment_variable>
+                </action>
+            </actions>
+        </install>
+    </package>
+</tool_dependency>