Mercurial > repos > iuc > prinseq

changeset 1:6b865dde1baa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prinseq/ commit af00d26844b62927fd13703cd58ea3c59cc8f708
author iuc
date Sat, 21 Jan 2017 06:27:29 -0500
parents ba78b984a9eb
children 74afc47f326c
files prinseq.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/prinseq.xml	Tue May 31 07:43:42 2016 -0400
+++ b/prinseq.xml	Sat Jan 21 06:27:29 2017 -0500
@@ -35,7 +35,7 @@
         prinseq-lite.pl
             #if $seq_type.seq_type_opt == "single":
                 -fastq "$seq_type.input_singles"
-                #if $seq_type.input_singles.ext == "fastqillumina":
+                #if $seq_type.input_singles.is_of_type('fastqillumina'):
                     -phred64
                 #end if
             #else:
@@ -45,7 +45,7 @@
                     #import sys
                     #silent sys.stderr.write( 'Both pairs from your paired-end library need to be from the same filetype.' )
                 #end if
-                #if $seq_type.input_mate1.ext == "fastqillumina":
+                #if $seq_type.input_mate1.is_of_type('fastqillumina'):
                     -phred64
                 #end if
             #end if