Mercurial > repos > iuc > progressivemauve
comparison progressivemauve.xml @ 1:bca52822843e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/progressivemauve commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7
author | iuc |
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date | Fri, 07 Sep 2018 11:30:11 -0400 |
parents | 74093fb62bdf |
children | bdb752f3c6bb |
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0:74093fb62bdf | 1:bca52822843e |
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189 <change_format> | 189 <change_format> |
190 <when input="mums" value="--mums" format="tabular" /> | 190 <when input="mums" value="--mums" format="tabular" /> |
191 </change_format> | 191 </change_format> |
192 </data> | 192 </data> |
193 <data format="nhx" name="output_guide_tree_file" label="${tool.name} alignment of ${on_string}: Guide tree"> | 193 <data format="nhx" name="output_guide_tree_file" label="${tool.name} alignment of ${on_string}: Guide tree"> |
194 <when>output_guide_tree</when> | 194 <filter>output_guide_tree</filter> |
195 </data> | 195 </data> |
196 <data format="tabular" name="output_backbone_file" label="${tool.name} alignment of ${on_string}: Backbone"> | 196 <data format="tabular" name="output_backbone_file" label="${tool.name} alignment of ${on_string}: Backbone"> |
197 <when>output_backbone</when> | 197 <filter>output_guide_tree</filter> |
198 </data> | 198 </data> |
199 </outputs> | 199 </outputs> |
200 <tests> | 200 <tests> |
201 <test> | 201 <test> |
202 <param name="sequences" value="phagey.fa,karma.fa" /> | 202 <param name="sequences" value="phagey.fa,karma.fa" /> |
203 <output name="output" file="1.xmfa" lines_diff="20"/> | 203 <output name="output" file="1.xmfa" lines_diff="20"/> |
204 </test> | 204 </test> |
205 <test> | 205 <test> |
206 <param name="sequences" value="merged.fa" /> | 206 <param name="sequences" value="merged.fa" /> |
207 <output name="output" file="1.xmfa" lines_diff="20"/> | 207 <output name="output" file="2.xmfa" lines_diff="20"/> |
208 </test> | 208 </test> |
209 <test> | 209 <test> |
210 <param name="sequences" value="merged.fa" /> | 210 <param name="sequences" value="merged.fa" /> |
211 <param name="output_guide_tree" value="True" /> | 211 <param name="output_guide_tree" value="True" /> |
212 <output name="output" file="1.xmfa" lines_diff="20"/> | 212 <output name="output" file="2.xmfa" lines_diff="20"/> |
213 <output name="output_guide_tree_file" file="1.nhx" /> | 213 <output name="output_guide_tree_file" file="1.nhx" /> |
214 </test> | 214 </test> |
215 <test> | 215 <test> |
216 <param name="sequences" value="merged.fa" /> | 216 <param name="sequences" value="merged.fa" /> |
217 <param name="mums" value="True" /> | 217 <param name="mums" value="True" /> |
218 <output name="output" file="1.mums" compare="sim_size" delta="1000"/> | 218 <output name="output" file="1.mums" compare="sim_size" delta="1000"/> |
219 </test> | 219 </test> |
220 <test> | 220 <test> |
221 <param name="sequences" value="merged.fa" /> | 221 <param name="sequences" value="merged.fa" /> |
222 <param name="match_input" value="1.mums" /> | 222 <param name="match_input" value="1.mums" /> |
223 <output name="output" file="1.xmfa" lines_diff="24"/> | 223 <output name="output" file="2.xmfa" lines_diff="24"/> |
224 </test> | 224 </test> |
225 </tests> | 225 </tests> |
226 <help><![CDATA[ | 226 <help><![CDATA[ |
227 What it does | 227 What it does |
228 ============ | 228 ============ |