Mercurial > repos > iuc > psiclass

diff test-data/test02_meta_annotation.gtf @ 0:1b690aa060f6 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/psiclass commit 2dc6baaeb2d595cbd8d8ffe3bf22b199a0ba23e4
author iuc
date Tue, 26 Sep 2023 16:51:18 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test02_meta_annotation.gtf	Tue Sep 26 16:51:18 2023 +0000
@@ -0,0 +1,41 @@
+chr16	PsiCLASS	transcript	784996	788300	1000	-	.	gene_id "chr16.0"; transcript_id "chr16.0.0"; FPKM "80537.900652"; TPM "478698.059272"; cov "29.537275"; sample_cnt "1";
+chr16	PsiCLASS	exon	784996	786377	1000	-	.	gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "1"; FPKM "80537.900652"; TPM "478698.059272"; cov "29.537275"; sample_cnt "1";
+chr16	PsiCLASS	exon	786827	786928	1000	-	.	gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "2"; FPKM "80537.900652"; TPM "478698.059272"; cov "29.537275"; sample_cnt "1";
+chr16	PsiCLASS	exon	787077	787179	1000	-	.	gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "3"; FPKM "80537.900652"; TPM "478698.059272"; cov "29.537275"; sample_cnt "1";
+chr16	PsiCLASS	exon	787354	787477	1000	-	.	gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "4"; FPKM "80537.900652"; TPM "478698.059272"; cov "29.537275"; sample_cnt "1";
+chr16	PsiCLASS	exon	787556	787744	1000	-	.	gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "5"; FPKM "80537.900652"; TPM "478698.059272"; cov "29.537275"; sample_cnt "1";
+chr16	PsiCLASS	exon	788256	788300	1000	-	.	gene_id "chr16.0"; transcript_id "chr16.0.0"; exon_number "6"; FPKM "80537.900652"; TPM "478698.059272"; cov "29.537275"; sample_cnt "1";
+chr16	PsiCLASS	transcript	789075	798063	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	789075	789125	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "1"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	789210	789360	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "2"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	789547	789715	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "3"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	790177	790269	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "4"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	790347	790399	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "5"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	790525	790666	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "6"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	791161	791370	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "7"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	791851	791948	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "8"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	792224	792347	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "9"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	792439	792590	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "10"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	792718	792811	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "11"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	792966	793064	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "12"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	793144	793274	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "13"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	794054	794201	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "14"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	795132	795356	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "15"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	795685	795834	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "16"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	795947	796077	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "17"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	796717	796861	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "18"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	796961	797092	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "19"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	797694	797751	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "20"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	exon	797839	798063	1000	+	.	gene_id "chr16.3"; transcript_id "chr16.3.0"; exon_number "21"; FPKM "54415.405737"; TPM "323432.184222"; cov "19.956850"; sample_cnt "1";
+chr16	PsiCLASS	transcript	806296	806764	1000	.	.	gene_id "chr16.5"; transcript_id "chr16.5.0"; FPKM "10464.766439"; TPM "62200.074061"; cov "3.837953"; sample_cnt "1";
+chr16	PsiCLASS	exon	806296	806764	1000	.	.	gene_id "chr16.5"; transcript_id "chr16.5.0"; exon_number "1"; FPKM "10464.766439"; TPM "62200.074061"; cov "3.837953"; sample_cnt "1";
+chr16	PsiCLASS	transcript	854556	879737	1000	-	.	gene_id "chr16.6"; transcript_id "chr16.6.0"; FPKM "14192.358060"; TPM "84355.988981"; cov "5.205047"; sample_cnt "1";
+chr16	PsiCLASS	exon	854556	854706	1000	-	.	gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "1"; FPKM "14192.358060"; TPM "84355.988981"; cov "5.205047"; sample_cnt "1";
+chr16	PsiCLASS	exon	868944	869056	1000	-	.	gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "2"; FPKM "14192.358060"; TPM "84355.988981"; cov "5.205047"; sample_cnt "1";
+chr16	PsiCLASS	exon	869883	870066	1000	-	.	gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "3"; FPKM "14192.358060"; TPM "84355.988981"; cov "5.205047"; sample_cnt "1";
+chr16	PsiCLASS	exon	870729	870882	1000	-	.	gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "4"; FPKM "14192.358060"; TPM "84355.988981"; cov "5.205047"; sample_cnt "1";
+chr16	PsiCLASS	exon	871161	871341	1000	-	.	gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "5"; FPKM "14192.358060"; TPM "84355.988981"; cov "5.205047"; sample_cnt "1";
+chr16	PsiCLASS	exon	879570	879737	1000	-	.	gene_id "chr16.6"; transcript_id "chr16.6.0"; exon_number "6"; FPKM "14192.358060"; TPM "84355.988981"; cov "5.205047"; sample_cnt "1";
+chr16	PsiCLASS	transcript	954357	970856	1000	-	.	gene_id "chr16.8"; transcript_id "chr16.8.0"; FPKM "8633.202217"; TPM "51313.693465"; cov "3.166227"; sample_cnt "1";
+chr16	PsiCLASS	exon	954357	954666	1000	-	.	gene_id "chr16.8"; transcript_id "chr16.8.0"; exon_number "1"; FPKM "8633.202217"; TPM "51313.693465"; cov "3.166227"; sample_cnt "1";
+chr16	PsiCLASS	exon	970788	970856	1000	-	.	gene_id "chr16.8"; transcript_id "chr16.8.0"; exon_number "2"; FPKM "8633.202217"; TPM "51313.693465"; cov "3.166227"; sample_cnt "1";