diff test-data/ngsc_out.cov @ 0:8ec117da1796 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/purge_dups commit ed3bf33e007841e359d164b2aa9e2ecf7fa5fa96"
author iuc
date Fri, 05 Feb 2021 17:52:51 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ngsc_out.cov	Fri Feb 05 17:52:51 2021 +0000
@@ -0,0 +1,336 @@
+>>chrM	0
+1	0	0
+>GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT	0
+1	0	0
+>CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA	0
+1	0	0
+>ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG	0
+1	0	0
+>ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA	0
+1	0	0
+>AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA	0
+1	0	0
+>AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT	0
+1	0	0
+>CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT	0
+1	0	0
+>AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT	0
+1	0	0
+>TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT	0
+1	0	0
+>CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA	0
+1	0	0
+>TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA	0
+1	0	0
+>TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG	0
+1	0	0
+>ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT	0
+1	0	0
+>CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT	0
+1	0	0
+>AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA	0
+1	0	0
+>AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA	0
+1	0	0
+>TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA	0
+1	0	0
+>TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA	0
+1	0	0
+>TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA	0
+1	0	0
+>ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC	0
+1	0	0
+>taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt	0
+1	0	0
+>cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG	0
+1	0	0
+>TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC	0
+1	0	0
+>TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG	0
+1	0	0
+>TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT	0
+1	0	0
+>CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT	0
+1	0	0
+>AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg	0
+1	0	0
+>caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT	0
+1	0	0
+>CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG	0
+1	0	0
+>CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT	0
+1	0	0
+>CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC	0
+1	0	0
+>CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG	0
+1	0	0
+>ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC	0
+1	0	0
+>ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA	0
+1	0	0
+>ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG	0
+1	0	0
+>ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA	0
+1	0	0
+>TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA	0
+1	0	0
+>ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact	0
+1	0	0
+>ttacaccatgtcctaCAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCAT	0
+1	0	0
+>CTTCACAACTATTCTAATAACAGTTCTTCTAGGAACTATAATCGTTATAA	0
+1	0	0
+>GCCATTATCCCTATCCTAATAAAAAAGTACAATCCCCGAACCATAGAAGC	0
+1	0	0
+>TAGCGATCATCATTAACCTCATACACTCAGGCCAATGAACAATCACAAAA	0
+1	0	0
+>ACTTGGACTCACACCATTCCACTTCTGAGTACCCGAAGTCACACAGGGCA	0
+1	0	0
+>ATATCAATCCTATATCAAATCTCACCCTCAATTAACCTAAATATCTTATT	0
+1	0	0
+>AAACCCAACTACGAAAAATCATAGCATACTCGTCAATCGCGCATATAGGA	0
+1	0	0
+>ATTAATTTACATTATAATAACACTCACAATATTCATACTATTTATCCACA	0
+1	0	0
+>CTAACCACTACACTAATCTTAATTACCTTACTATCCATAGGAGGCCTCCC	0
+1	0	0
+>AAAATAGCAGCATCATCCTCCCCACACTAATAGCCATTATAGCACTACTC	0
+1	0	0
+>CCCATCCACAAACAACATAAAAATAAAATGACAATTCGAAACCAAACGAA	0
+1	0	0
+>ACCCCCATACTATCAATTTTGGACTAGGAATTTAGGTTAACATCCCAGAC	0
+1	0	0
+>TAAGGACTGCGAGACTCTATCTCACATCAATTGAACGCAAATCAAACTCT	0
+1	0	0
+>TTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCTCC	0
+1	0	0
+>TCCTTTGAATTTGCAATTCAATGTGAAAATTCACCACGGGACTTGATAAG	0
+1	0	0
+>CCATCTTACCTATGTTCATCAACCGCTGACTATTTTCAACTAACCACAAA	0
+1	0	0
+>AACTGCCCTAAGCCTCCTAATCCGTGCTGAATTAGGCCAACCTGGGACCC	0
+1	0	0
+>GTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAA	0
+1	0	0
+>TAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTCTC	0
+1	0	0
+>TCCTCTAGCTGGAAATCTGGCGCATGCAGGAGCCTCTGTTGACTTAACCA	0
+1	0	0
+>TTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCA	0
+1	0	0
+>TAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACAGACCGT	0
+1	0	0
+>TTATCAACACCTATTCTGATTCTTCGGACACCCCGAAGTCTATATTCTTA	0
+1	0	0
+>AAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCAT	0
+1	0	0
+>TAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATCATCGCT	0
+1	0	0
+>AAATATCAAATGATCTCCAGCTATACTCTGAGCTCTAGGCTTCATCTTCT	0
+1	0	0
+>GATATTGTTCTCCACGATACTTATTATGTAGTAGCACATTTCCATTATGT	0
+1	0	0
+>TCCCTCTATTCTCAGGATACACACTCAACCAAACCTGAGCAAAAATCCAC	0
+1	0	0
+>CCTTGGCCTCTCAGGAATGCCACGACGCTATTCTGATTATCCAGACGCAT	0
+1	0	0
+>GCAGTGATACTAATAATTTTCATAATTTGAGAAGCGTTCGCATCCAAACG	0
+1	0	0
+>GATGCCCCCCACCATACCACACATTTGAAGAACCCACCTACGTAAACCTA	0
+1	0	0
+>tcataaccactatgtctttctcCATCAATTGAGGTATTAGTAAAAATTAC	0
+1	0	0
+>GCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGA	0
+1	0	0
+>GCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTAACC	0
+1	0	0
+>ACCAGCCATCATCCTTATTCTAATCGCCCTCCCATCCCTACGAATTCTAT	0
+1	0	0
+>CACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTT	0
+1	0	0
+>TTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATCCGA	0
+1	0	0
+>AGGCCTAAAAACAGACGCTATCCCTGGGCGCCTAAATCAGACAACTCTCG	0
+1	0	0
+>TCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACA	0
+1	0	0
+>TAGCATTAACCTTTTAAGTTAAAGATTGAGGGTTCAACCCCCTCCCTAGT	0
+1	0	0
+>AATCCTAACTCTATTTATTGTATTTCAACTAAAAATCTCAAAGCACTCCT	0
+1	0	0
+>CCTTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCA	0
+1	0	0
+>CCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTC	0
+1	0	0
+>AGCAAAGGACAAACCTGAACTCTTATACTCATATCACTGATCCTATTCAT	0
+1	0	0
+>CACAACTATCAATAAACCTAGGCATAGCTATTCCCCTATGGGCAGGGACA	0
+1	0	0
+>ACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGA	0
+1	0	0
+>AACATTACCGCCGGACACCTCCTAATACACCTCATCGGAGGGGCAACACT	0
+1	0	0
+>TAATTCTACTAACTATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTAC	0
+1	0	0
+>CACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTAC	0
+1	0	0
+>ACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAACATCCTT	0
+1	0	0
+>CCATCACACATCAATCGTTCAAAAGGGACTCCGATATGGCATAATCCTTT	0
+1	0	0
+>CACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCAC	0
+1	0	0
+>TGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGCCTAATA	0
+1	0	0
+>AGGCGTATACTTCACCCTTCTCCAAGCCTCAGAATACTATGAAGCCTCAT	0
+1	0	0
+>TTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTT	0
+1	0	0
+>AAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTATTCTTG	0
+1	0	0
+>CAATTGACTTCCAATCAATCAGCTTCGGTATAACCCGAAAAAGAATAATA	0
+1	0	0
+>ACTCATCGCATTCTGACTACCACAACTAAACATCTATGCAGAAAAAACCA	0
+1	0	0
+>TCAATAAAATTTTTCTTAGTGGCCATTACATTTCTGCTATTCGACTTAGA	0
+1	0	0
+>ACACTATACTTATCATAGCACTAGTCCTAATCTCTCTTCTAGCCATCAGC	0
+1	0	0
+>TTAGTTTAAACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACT	0
+1	0	0
+>ACAGTATCCCTCGTAGGCCTACTAATGTACCGATCCCACCTAATATCCTC	0
+1	0	0
+>TAATAGTCCTAAACACCCACTTCACACTAGCTAGTATAATACCTATCATC	0
+1	0	0
+>CATAGTCTCCAATACTTATGGAGTAGACCACGTACAAAACCTTAACCTCC	0
+1	0	0
+>GACTATCAAAAAAGAATATAATCTGAATCAACACTACAACCTATAGTCTA	0
+1	0	0
+>CCTAAACTTCTCACTAATATTCTTCTCCGATCCCCTATCAGCCCCACTTC	0
+1	0	0
+>CATCTATCTAAGGAACCACTAATCCGAAAAAAACTCTACATCACCATGCT	0
+1	0	0
+>TCTCCTTCTACATCCTATTTGAAGCCACATTAGTTCCAACACTAATTATC	0
+1	0	0
+>CCTATTCTACACACTAATAGGTTCCCTCCCACTCTTAGTTGCACTAATCT	0
+1	0	0
+>AACCAAGCACTACCCGACTCTTGATCCAATATTTTCCTATGACTAGCATG	0
+1	0	0
+>TCCCAAAAGCCCATGTAGAAGCCCCAATTGCCGGATCCATAGTGCTAGCA	0
+1	0	0
+>ACTAAACCCCCAAACTAGCTTTATAGCCTACCCCTTCCTCATACTATCCC	0
+1	0	0
+>AAATCACTTATTGCATACTCCTCTGTCAGCCACATAGCCCTAGTAATCGT	0
+1	0	0
+>TAATCGCTCACGGCCTTACATCATCAATACTATTCTGCCTGGCAAACTCA	0
+1	0	0
+>AACACTTCTTCCCCTTATAGCAGCCTGATGACTATTAGCCAGCCTAACCA	0
+1	0	0
+>ATATCATCATTCTCATGATCAAATATTACCATTATCCTAATAGGAGCCAA	0
+1	0	0
+>GAGGGAAATACACACACCATATCAACAGCATTAAACCTTCATTTACACGA	0
+1	0	0
+>TAACCCTAAAATTATCCTAGGCTTTACGTACTGTAAATATAGTTTAACAA	0
+1	0	0
+>CGAGAAAGTATGCAAGAACTGCTAATTCATGCCCCCATGTCCAACAAACA	0
+1	0	0
+>CCAAAAAATTGGTGCAACTCCAAATAAAAGTAATCAACATGTTCTCCTCC	0
+1	0	0
+>CTTCAATACCTACAAAAACAGCACGTTCCCGCATCATGTAAAAAACACTA	0
+1	0	0
+>TCTGGACAAGAAACAATTATCTCAAACTGACACTGAATAACCATACAAAC	0
+1	0	0
+>TACCAGTAGCCCTATTCGTAACATGATCTATTATGGAATTCTCCCTATGA	0
+1	0	0
+>ATTCCTCATCACTATAATAATTCTAGTCACAGCTAACAACCTTTTCCAAC	0
+1	0	0
+>TGATGATACGGCCGAACAGATGCCAACACCGCGGCCCTTCAAGCAATCCT	0
+1	0	0
+>TATTCAACACCAACACATGAGACCTCCAACAAATCTTCATACTCGACCCC	0
+1	0	0
+>ATCCGCTCAATTTGGACTCCACCCATGACTTCCTTCAGCCATAGAGGGCC	0
+1	0	0
+>GTCTTCCTGCTAATCCGCTTCCATCCACTAATAGAAAACAACAAAACAAT	0
+1	0	0
+>TCTGCGCACTCACTCAAAACGATATCAAAAAAATCATTGCTTTCTCCACC	0
+1	0	0
+>CCTAGCATTCCTCCACATTTGCACTCACGCATTCTTCAAAGCTATACTAT	0
+1	0	0
+>CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT	0
+1	0	0
+>ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC	0
+1	0	0
+>TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC	0
+1	0	0
+>CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA	0
+1	0	0
+>CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG	0
+1	0	0
+>CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG	0
+1	0	0
+>TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC	0
+1	0	0
+>CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG	0
+1	0	0
+>ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC	0
+1	0	0
+>CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT	0
+1	0	0
+>AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG	0
+1	0	0
+>ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC	0
+1	0	0
+>AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA	0
+1	0	0
+>GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC	0
+1	0	0
+>CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG	0
+1	0	0
+>ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA	0
+1	0	0
+>AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG	0
+1	0	0
+>ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT	0
+1	0	0
+>ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC	0
+1	0	0
+>CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT	0
+1	0	0
+>CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT	0
+1	0	0
+>ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA	0
+1	0	0
+>AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC	0
+1	0	0
+>CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT	0
+1	0	0
+>CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC	0
+1	0	0
+>ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC	0
+1	0	0
+>TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT	0
+1	0	0
+>CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG	0
+1	0	0
+>GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC	0
+1	0	0
+>GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG	0
+1	0	0
+>TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA	0
+1	0	0
+>CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT	0
+1	0	0
+>CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA	0
+1	0	0
+>ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct	0
+1	0	0
+>gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc	0
+1	0	0
+>ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA	0
+1	0	0
+>GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT	0
+1	0	0
+>GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT	0
+1	0	0
+>TTCTTCCCCC	0
+1	0	0