Mercurial > repos > iuc > purge_dups
diff test-data/ngsc_out.cov @ 0:8ec117da1796 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/purge_dups commit ed3bf33e007841e359d164b2aa9e2ecf7fa5fa96"
| author | iuc |
|---|---|
| date | Fri, 05 Feb 2021 17:52:51 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/ngsc_out.cov Fri Feb 05 17:52:51 2021 +0000 @@ -0,0 +1,336 @@ +>>chrM 0 +1 0 0 +>GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT 0 +1 0 0 +>CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA 0 +1 0 0 +>ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG 0 +1 0 0 +>ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA 0 +1 0 0 +>AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA 0 +1 0 0 +>AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT 0 +1 0 0 +>CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT 0 +1 0 0 +>AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT 0 +1 0 0 +>TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT 0 +1 0 0 +>CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA 0 +1 0 0 +>TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA 0 +1 0 0 +>TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG 0 +1 0 0 +>ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT 0 +1 0 0 +>CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT 0 +1 0 0 +>AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA 0 +1 0 0 +>AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA 0 +1 0 0 +>TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA 0 +1 0 0 +>TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA 0 +1 0 0 +>TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA 0 +1 0 0 +>ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC 0 +1 0 0 +>taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt 0 +1 0 0 +>cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG 0 +1 0 0 +>TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC 0 +1 0 0 +>TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG 0 +1 0 0 +>TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT 0 +1 0 0 +>CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT 0 +1 0 0 +>AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg 0 +1 0 0 +>caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT 0 +1 0 0 +>CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG 0 +1 0 0 +>CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT 0 +1 0 0 +>CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC 0 +1 0 0 +>CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG 0 +1 0 0 +>ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC 0 +1 0 0 +>ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA 0 +1 0 0 +>ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG 0 +1 0 0 +>ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA 0 +1 0 0 +>TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA 0 +1 0 0 +>ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact 0 +1 0 0 +>ttacaccatgtcctaCAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCAT 0 +1 0 0 +>CTTCACAACTATTCTAATAACAGTTCTTCTAGGAACTATAATCGTTATAA 0 +1 0 0 +>GCCATTATCCCTATCCTAATAAAAAAGTACAATCCCCGAACCATAGAAGC 0 +1 0 0 +>TAGCGATCATCATTAACCTCATACACTCAGGCCAATGAACAATCACAAAA 0 +1 0 0 +>ACTTGGACTCACACCATTCCACTTCTGAGTACCCGAAGTCACACAGGGCA 0 +1 0 0 +>ATATCAATCCTATATCAAATCTCACCCTCAATTAACCTAAATATCTTATT 0 +1 0 0 +>AAACCCAACTACGAAAAATCATAGCATACTCGTCAATCGCGCATATAGGA 0 +1 0 0 +>ATTAATTTACATTATAATAACACTCACAATATTCATACTATTTATCCACA 0 +1 0 0 +>CTAACCACTACACTAATCTTAATTACCTTACTATCCATAGGAGGCCTCCC 0 +1 0 0 +>AAAATAGCAGCATCATCCTCCCCACACTAATAGCCATTATAGCACTACTC 0 +1 0 0 +>CCCATCCACAAACAACATAAAAATAAAATGACAATTCGAAACCAAACGAA 0 +1 0 0 +>ACCCCCATACTATCAATTTTGGACTAGGAATTTAGGTTAACATCCCAGAC 0 +1 0 0 +>TAAGGACTGCGAGACTCTATCTCACATCAATTGAACGCAAATCAAACTCT 0 +1 0 0 +>TTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCTCC 0 +1 0 0 +>TCCTTTGAATTTGCAATTCAATGTGAAAATTCACCACGGGACTTGATAAG 0 +1 0 0 +>CCATCTTACCTATGTTCATCAACCGCTGACTATTTTCAACTAACCACAAA 0 +1 0 0 +>AACTGCCCTAAGCCTCCTAATCCGTGCTGAATTAGGCCAACCTGGGACCC 0 +1 0 0 +>GTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAA 0 +1 0 0 +>TAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTCTC 0 +1 0 0 +>TCCTCTAGCTGGAAATCTGGCGCATGCAGGAGCCTCTGTTGACTTAACCA 0 +1 0 0 +>TTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCA 0 +1 0 0 +>TAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACAGACCGT 0 +1 0 0 +>TTATCAACACCTATTCTGATTCTTCGGACACCCCGAAGTCTATATTCTTA 0 +1 0 0 +>AAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCAT 0 +1 0 0 +>TAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATCATCGCT 0 +1 0 0 +>AAATATCAAATGATCTCCAGCTATACTCTGAGCTCTAGGCTTCATCTTCT 0 +1 0 0 +>GATATTGTTCTCCACGATACTTATTATGTAGTAGCACATTTCCATTATGT 0 +1 0 0 +>TCCCTCTATTCTCAGGATACACACTCAACCAAACCTGAGCAAAAATCCAC 0 +1 0 0 +>CCTTGGCCTCTCAGGAATGCCACGACGCTATTCTGATTATCCAGACGCAT 0 +1 0 0 +>GCAGTGATACTAATAATTTTCATAATTTGAGAAGCGTTCGCATCCAAACG 0 +1 0 0 +>GATGCCCCCCACCATACCACACATTTGAAGAACCCACCTACGTAAACCTA 0 +1 0 0 +>tcataaccactatgtctttctcCATCAATTGAGGTATTAGTAAAAATTAC 0 +1 0 0 +>GCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGA 0 +1 0 0 +>GCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTAACC 0 +1 0 0 +>ACCAGCCATCATCCTTATTCTAATCGCCCTCCCATCCCTACGAATTCTAT 0 +1 0 0 +>CACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTT 0 +1 0 0 +>TTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATCCGA 0 +1 0 0 +>AGGCCTAAAAACAGACGCTATCCCTGGGCGCCTAAATCAGACAACTCTCG 0 +1 0 0 +>TCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACA 0 +1 0 0 +>TAGCATTAACCTTTTAAGTTAAAGATTGAGGGTTCAACCCCCTCCCTAGT 0 +1 0 0 +>AATCCTAACTCTATTTATTGTATTTCAACTAAAAATCTCAAAGCACTCCT 0 +1 0 0 +>CCTTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCA 0 +1 0 0 +>CCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTC 0 +1 0 0 +>AGCAAAGGACAAACCTGAACTCTTATACTCATATCACTGATCCTATTCAT 0 +1 0 0 +>CACAACTATCAATAAACCTAGGCATAGCTATTCCCCTATGGGCAGGGACA 0 +1 0 0 +>ACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGA 0 +1 0 0 +>AACATTACCGCCGGACACCTCCTAATACACCTCATCGGAGGGGCAACACT 0 +1 0 0 +>TAATTCTACTAACTATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTAC 0 +1 0 0 +>CACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTAC 0 +1 0 0 +>ACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAACATCCTT 0 +1 0 0 +>CCATCACACATCAATCGTTCAAAAGGGACTCCGATATGGCATAATCCTTT 0 +1 0 0 +>CACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCAC 0 +1 0 0 +>TGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGCCTAATA 0 +1 0 0 +>AGGCGTATACTTCACCCTTCTCCAAGCCTCAGAATACTATGAAGCCTCAT 0 +1 0 0 +>TTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTT 0 +1 0 0 +>AAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTATTCTTG 0 +1 0 0 +>CAATTGACTTCCAATCAATCAGCTTCGGTATAACCCGAAAAAGAATAATA 0 +1 0 0 +>ACTCATCGCATTCTGACTACCACAACTAAACATCTATGCAGAAAAAACCA 0 +1 0 0 +>TCAATAAAATTTTTCTTAGTGGCCATTACATTTCTGCTATTCGACTTAGA 0 +1 0 0 +>ACACTATACTTATCATAGCACTAGTCCTAATCTCTCTTCTAGCCATCAGC 0 +1 0 0 +>TTAGTTTAAACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACT 0 +1 0 0 +>ACAGTATCCCTCGTAGGCCTACTAATGTACCGATCCCACCTAATATCCTC 0 +1 0 0 +>TAATAGTCCTAAACACCCACTTCACACTAGCTAGTATAATACCTATCATC 0 +1 0 0 +>CATAGTCTCCAATACTTATGGAGTAGACCACGTACAAAACCTTAACCTCC 0 +1 0 0 +>GACTATCAAAAAAGAATATAATCTGAATCAACACTACAACCTATAGTCTA 0 +1 0 0 +>CCTAAACTTCTCACTAATATTCTTCTCCGATCCCCTATCAGCCCCACTTC 0 +1 0 0 +>CATCTATCTAAGGAACCACTAATCCGAAAAAAACTCTACATCACCATGCT 0 +1 0 0 +>TCTCCTTCTACATCCTATTTGAAGCCACATTAGTTCCAACACTAATTATC 0 +1 0 0 +>CCTATTCTACACACTAATAGGTTCCCTCCCACTCTTAGTTGCACTAATCT 0 +1 0 0 +>AACCAAGCACTACCCGACTCTTGATCCAATATTTTCCTATGACTAGCATG 0 +1 0 0 +>TCCCAAAAGCCCATGTAGAAGCCCCAATTGCCGGATCCATAGTGCTAGCA 0 +1 0 0 +>ACTAAACCCCCAAACTAGCTTTATAGCCTACCCCTTCCTCATACTATCCC 0 +1 0 0 +>AAATCACTTATTGCATACTCCTCTGTCAGCCACATAGCCCTAGTAATCGT 0 +1 0 0 +>TAATCGCTCACGGCCTTACATCATCAATACTATTCTGCCTGGCAAACTCA 0 +1 0 0 +>AACACTTCTTCCCCTTATAGCAGCCTGATGACTATTAGCCAGCCTAACCA 0 +1 0 0 +>ATATCATCATTCTCATGATCAAATATTACCATTATCCTAATAGGAGCCAA 0 +1 0 0 +>GAGGGAAATACACACACCATATCAACAGCATTAAACCTTCATTTACACGA 0 +1 0 0 +>TAACCCTAAAATTATCCTAGGCTTTACGTACTGTAAATATAGTTTAACAA 0 +1 0 0 +>CGAGAAAGTATGCAAGAACTGCTAATTCATGCCCCCATGTCCAACAAACA 0 +1 0 0 +>CCAAAAAATTGGTGCAACTCCAAATAAAAGTAATCAACATGTTCTCCTCC 0 +1 0 0 +>CTTCAATACCTACAAAAACAGCACGTTCCCGCATCATGTAAAAAACACTA 0 +1 0 0 +>TCTGGACAAGAAACAATTATCTCAAACTGACACTGAATAACCATACAAAC 0 +1 0 0 +>TACCAGTAGCCCTATTCGTAACATGATCTATTATGGAATTCTCCCTATGA 0 +1 0 0 +>ATTCCTCATCACTATAATAATTCTAGTCACAGCTAACAACCTTTTCCAAC 0 +1 0 0 +>TGATGATACGGCCGAACAGATGCCAACACCGCGGCCCTTCAAGCAATCCT 0 +1 0 0 +>TATTCAACACCAACACATGAGACCTCCAACAAATCTTCATACTCGACCCC 0 +1 0 0 +>ATCCGCTCAATTTGGACTCCACCCATGACTTCCTTCAGCCATAGAGGGCC 0 +1 0 0 +>GTCTTCCTGCTAATCCGCTTCCATCCACTAATAGAAAACAACAAAACAAT 0 +1 0 0 +>TCTGCGCACTCACTCAAAACGATATCAAAAAAATCATTGCTTTCTCCACC 0 +1 0 0 +>CCTAGCATTCCTCCACATTTGCACTCACGCATTCTTCAAAGCTATACTAT 0 +1 0 0 +>CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT 0 +1 0 0 +>ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC 0 +1 0 0 +>TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC 0 +1 0 0 +>CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA 0 +1 0 0 +>CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG 0 +1 0 0 +>CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG 0 +1 0 0 +>TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC 0 +1 0 0 +>CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG 0 +1 0 0 +>ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC 0 +1 0 0 +>CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT 0 +1 0 0 +>AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG 0 +1 0 0 +>ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC 0 +1 0 0 +>AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA 0 +1 0 0 +>GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC 0 +1 0 0 +>CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG 0 +1 0 0 +>ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA 0 +1 0 0 +>AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG 0 +1 0 0 +>ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT 0 +1 0 0 +>ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC 0 +1 0 0 +>CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT 0 +1 0 0 +>CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT 0 +1 0 0 +>ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA 0 +1 0 0 +>AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC 0 +1 0 0 +>CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT 0 +1 0 0 +>CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC 0 +1 0 0 +>ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC 0 +1 0 0 +>TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT 0 +1 0 0 +>CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG 0 +1 0 0 +>GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC 0 +1 0 0 +>GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG 0 +1 0 0 +>TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA 0 +1 0 0 +>CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT 0 +1 0 0 +>CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA 0 +1 0 0 +>ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct 0 +1 0 0 +>gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc 0 +1 0 0 +>ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA 0 +1 0 0 +>GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT 0 +1 0 0 +>GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT 0 +1 0 0 +>TTCTTCCCCC 0 +1 0 0