Mercurial > repos > iuc > pygenometracks

annotate test-data/testpyGT.sh @ 8:4ac4e7083b7e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
author iuc
date Tue, 21 Jul 2020 03:32:48 -0400
parents 326a3db8d9d1
children 2824d77cd8f8
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eca03db4f612 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
1 . <(planemo conda_env pyGenomeTracks.xml)
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4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
2 # pgt --tracks test-data/test1.ini --region chrX:3000000-3500000 -o test-data/master_TADs_plot.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
3 # pgt --tracks test-data/test2.ini --region chrX:3000000-3500000 -o test-data/bigwig_multiple.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
4 # pgt --tracks test-data/test3.ini --region chrX:3000000-3500000 -o test-data/master_TADs_BW_plot.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
5 # pgt --tracks test-data/test4.ini --region X:2700000-3100000 -o test-data/test_alpha.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
6 # pgt --tracks test-data/test5.ini --region X:3000000-3300000 -o test-data/test_gtf_bed4.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
7 # pgt --tracks test-data/test6.ini --region X:2760000-2802000 -o test-data/test_narrowPeak.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
8 # pgt --tracks test-data/test7.ini --region chrX:3300000-3500000 -o test-data/test_gtf_flybase_param.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
9 # pgt --tracks test-data/test8.ini --region chrX:3300000-3500000 -o test-data/test_ucsc_param.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
10 # pgt --tracks test-data/test9.ini --region X:3133000-3138000 -o test-data/test_arrowhead_zoom.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
11 # pgt --tracks test-data/test10.ini --region X:3340000-3380000 -o test-data/test_middle_triangle.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
12 # pgt --tracks test-data/test11.ini --region chrX:3250000-3400000 -o test-data/test_TADs_bdgm.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
13 # pgt --tracks test-data/test12.ini --region chrX:3000000-3300000 -o test-data/test_link.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
14 # pgt --tracks test-data/test13.ini --region chrX:3000000-3300000 -o test-data/test_link2.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
15 # pgt --tracks test-data/test14.ini --region chrX:3000000-3300000 --title "Scale bar" --trackLabelFraction 0.5 --trackLabelHAlign center -o test-data/test_scale_bar.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
16 # pgt --tracks test-data/test15.ini --region chrX:3300000-3500000 -o test-data/test_tssarrow.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
17 # pgt --tracks test-data/test4.ini --region chrX:2700000-3100000 --decreasingXAxis -o test-data/test_alpha_dec.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
18 # pgt --tracks test-data/test17.ini --region chr2:73,800,000-75,744,000 -o test-data/test_log.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
19 # pgt --tracks test-data/test18.ini --region chrX:2700000-3100000 -o test-data/test_operation.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
20 # pgt --tracks test-data/test19.ini --region chr2:73,800,000-75,744,000 -o test-data/test_log_grid.png
4ac4e7083b7e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 3bfe22506f7d9922ac885ef6a6fbe8f96c83ed14"
iuc
parents: 7
diff changeset
21 pgt --tracks test-data/test20.ini --region chrX:3000000-3300000 -o test-data/test_arcs_use_middle.png
5
eca03db4f612 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
22
eca03db4f612 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"
iuc
parents:
diff changeset
23 conda_env_deactivate