annotate test-data/test7.ini @ 15:36b848d5f3ec draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 7df009cda0bc57c6891fc5273b2440db6fcf5719

[x-axis]
where = top
[genes_1_0]
file = test-data/dm3_subset_BDGP5.78.gtf.gz
prefered_name = transcript_name
title = gtf default
color = #000000
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = grey
arrowhead_included = false
arrowhead_fraction = 0.004
color_backbone = #000000
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = normal
file_type = gtf
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[genes_2_0]
file = test-data/dm3_subset_BDGP5.78.gtf.gz
prefered_name = gene_name
merge_transcripts = true
merge_overlapping_exons = false
title = gtf merge transcripts, use gene_name, red 0.75 UTR
color = #000000
border_color = #000000
style = flybase
height_utr = 0.75
color_utr = #ff0000
arrowhead_included = false
arrowhead_fraction = 0.004
color_backbone = #000000
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = normal
file_type = gtf
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[genes_3_0]
file = test-data/dm3_subset_BDGP5.78.gtf.gz
prefered_name = gene_name
merge_transcripts = true
merge_overlapping_exons = true
title = same but merge overlapping exons
color = #000000
border_color = #000000
style = flybase
height_utr = 0.75
color_utr = #ff0000
arrowhead_included = false
arrowhead_fraction = 0.004
color_backbone = #000000
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = normal
file_type = gtf
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[genes_4_0]
file = test-data/dm3_genes_withrgbandscore.bed.gz
title = genes with scores
color = cool_r
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = grey
arrowhead_included = false
arrowhead_fraction = 0.004
color_backbone = #000000
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = normal
file_type = bed
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[genes_5_0]
file = test-data/dm3_genes_withrgbandscore.bed.gz
title = genes with utr as bed_rgb
color = #000000
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = bed_rgb
arrowhead_included = false
arrowhead_fraction = 0.004
color_backbone = #000000
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = normal
file_type = bed
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[genes_6_0]
file = test-data/dm3_genes_withrgbandscore.bed.gz
title = genes with coding as bed_rgb - labels_in_margin
color = bed_rgb
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = grey
arrowhead_included = false
arrowhead_fraction = 0.004
color_backbone = #000000
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = true
fontstyle = normal
file_type = bed
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[genes_7_0]
file = test-data/dm3_genes_withrgbandscore.bed.gz
title = genes bed_rgb like - all_labels_inside
color = bed_rgb
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = bed_rgb
arrowhead_included = false
arrowhead_fraction = 0.004
color_backbone = #000000
display = stacked
height = 10.0
labels = true
all_labels_inside = true
labels_in_margin = false
fontstyle = normal
file_type = bed
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no