Mercurial > repos > iuc > pygenometracks
comparison test-data/test7.ini @ 11:7dd841a32245 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author | iuc |
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date | Sat, 01 Oct 2022 08:43:22 +0000 |
parents | 326a3db8d9d1 |
children |
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10:a1abfa420d9d | 11:7dd841a32245 |
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1 [x-axis] | 1 [x-axis] |
2 where = top | 2 where = top |
3 [genes_0_0] | 3 [genes_1_0] |
4 file = test-data/dm3_genes.bed.gz | 4 file = test-data/dm3_subset_BDGP5.78.gtf.gz |
5 title = genes | 5 prefered_name = transcript_name |
6 title = gtf default | |
6 color = #000000 | 7 color = #000000 |
7 border_color = #000000 | 8 border_color = #000000 |
8 style = flybase | 9 style = flybase |
9 height_utr = 1.0 | 10 height_utr = 1.0 |
10 color_utr = grey | 11 color_utr = grey |
12 arrowhead_included = false | |
13 arrowhead_fraction = 0.004 | |
14 color_backbone = #000000 | |
11 display = stacked | 15 display = stacked |
12 height = 10.0 | 16 height = 10.0 |
13 labels = true | 17 labels = true |
14 file_type = bed | 18 all_labels_inside = false |
19 labels_in_margin = false | |
20 fontstyle = normal | |
21 file_type = gtf | |
15 global_max_row = false | 22 global_max_row = false |
16 max_labels = 60 | 23 max_labels = 60 |
17 line_width = 0.5 | 24 line_width = 0.5 |
18 arrowhead_included = false | |
19 overlay_previous = no | 25 overlay_previous = no |
20 [genes_1_0] | 26 [genes_2_0] |
21 file = test-data/dm3_subset_BDGP5.78.gtf.gz | 27 file = test-data/dm3_subset_BDGP5.78.gtf.gz |
22 prefered_name = gene_name | 28 prefered_name = gene_name |
23 merge_transcripts = true | 29 merge_transcripts = true |
24 title = gtf | 30 merge_overlapping_exons = false |
31 title = gtf merge transcripts, use gene_name, red 0.75 UTR | |
25 color = #000000 | 32 color = #000000 |
26 border_color = #000000 | 33 border_color = #000000 |
27 style = flybase | 34 style = flybase |
28 height_utr = 0.75 | 35 height_utr = 0.75 |
29 color_utr = #ff0000 | 36 color_utr = #ff0000 |
37 arrowhead_included = false | |
38 arrowhead_fraction = 0.004 | |
39 color_backbone = #000000 | |
30 display = stacked | 40 display = stacked |
31 height = 10.0 | 41 height = 10.0 |
32 labels = true | 42 labels = true |
33 file_type = bed | 43 all_labels_inside = false |
44 labels_in_margin = false | |
45 fontstyle = normal | |
46 file_type = gtf | |
34 global_max_row = false | 47 global_max_row = false |
35 max_labels = 60 | 48 max_labels = 60 |
36 line_width = 0.5 | 49 line_width = 0.5 |
50 overlay_previous = no | |
51 [genes_3_0] | |
52 file = test-data/dm3_subset_BDGP5.78.gtf.gz | |
53 prefered_name = gene_name | |
54 merge_transcripts = true | |
55 merge_overlapping_exons = true | |
56 title = same but merge overlapping exons | |
57 color = #000000 | |
58 border_color = #000000 | |
59 style = flybase | |
60 height_utr = 0.75 | |
61 color_utr = #ff0000 | |
37 arrowhead_included = false | 62 arrowhead_included = false |
63 arrowhead_fraction = 0.004 | |
64 color_backbone = #000000 | |
65 display = stacked | |
66 height = 10.0 | |
67 labels = true | |
68 all_labels_inside = false | |
69 labels_in_margin = false | |
70 fontstyle = normal | |
71 file_type = gtf | |
72 global_max_row = false | |
73 max_labels = 60 | |
74 line_width = 0.5 | |
38 overlay_previous = no | 75 overlay_previous = no |
39 [genes_2_0] | 76 [genes_4_0] |
40 file = test-data/dm3_genes_withrgbandscore.bed.gz | 77 file = test-data/dm3_genes_withrgbandscore.bed.gz |
41 title = genes with scores | 78 title = genes with scores |
42 color = cool_r | 79 color = cool_r |
43 border_color = #000000 | 80 border_color = #000000 |
44 style = flybase | 81 style = flybase |
45 height_utr = 1.0 | 82 height_utr = 1.0 |
46 color_utr = grey | 83 color_utr = grey |
84 arrowhead_included = false | |
85 arrowhead_fraction = 0.004 | |
86 color_backbone = #000000 | |
47 display = stacked | 87 display = stacked |
48 height = 10.0 | 88 height = 10.0 |
49 labels = true | 89 labels = true |
90 all_labels_inside = false | |
91 labels_in_margin = false | |
92 fontstyle = normal | |
50 file_type = bed | 93 file_type = bed |
51 global_max_row = false | 94 global_max_row = false |
52 max_labels = 60 | 95 max_labels = 60 |
53 line_width = 0.5 | 96 line_width = 0.5 |
54 arrowhead_included = false | |
55 overlay_previous = no | 97 overlay_previous = no |
56 [genes_3_0] | 98 [genes_5_0] |
57 file = test-data/dm3_genes_withrgbandscore.bed.gz | 99 file = test-data/dm3_genes_withrgbandscore.bed.gz |
58 title = genes with utr as bed_rgb | 100 title = genes with utr as bed_rgb |
59 color = black | 101 color = #000000 |
60 border_color = #000000 | 102 border_color = #000000 |
61 style = flybase | 103 style = flybase |
62 height_utr = 1.0 | 104 height_utr = 1.0 |
63 color_utr = bed_rgb | 105 color_utr = bed_rgb |
106 arrowhead_included = false | |
107 arrowhead_fraction = 0.004 | |
108 color_backbone = #000000 | |
64 display = stacked | 109 display = stacked |
65 height = 10.0 | 110 height = 10.0 |
66 labels = true | 111 labels = true |
112 all_labels_inside = false | |
113 labels_in_margin = false | |
114 fontstyle = normal | |
67 file_type = bed | 115 file_type = bed |
68 global_max_row = false | 116 global_max_row = false |
69 max_labels = 60 | 117 max_labels = 60 |
70 line_width = 0.5 | 118 line_width = 0.5 |
71 arrowhead_included = false | |
72 overlay_previous = no | 119 overlay_previous = no |
73 [genes_3_0] | 120 [genes_6_0] |
74 file = test-data/dm3_genes_withrgbandscore.bed.gz | 121 file = test-data/dm3_genes_withrgbandscore.bed.gz |
75 title = genes with coding as bed_rgb - labels_in_margin | 122 title = genes with coding as bed_rgb - labels_in_margin |
76 color = bed_rgb | 123 color = bed_rgb |
77 border_color = #000000 | 124 border_color = #000000 |
78 style = flybase | 125 style = flybase |
79 height_utr = 1.0 | 126 height_utr = 1.0 |
80 color_utr = grey | 127 color_utr = grey |
128 arrowhead_included = false | |
129 arrowhead_fraction = 0.004 | |
130 color_backbone = #000000 | |
81 display = stacked | 131 display = stacked |
82 height = 10.0 | 132 height = 10.0 |
83 labels = true | 133 labels = true |
134 all_labels_inside = false | |
84 labels_in_margin = true | 135 labels_in_margin = true |
136 fontstyle = normal | |
85 file_type = bed | 137 file_type = bed |
86 global_max_row = false | 138 global_max_row = false |
87 max_labels = 60 | 139 max_labels = 60 |
88 line_width = 0.5 | 140 line_width = 0.5 |
89 arrowhead_included = false | |
90 overlay_previous = no | 141 overlay_previous = no |
91 [genes_4_0] | 142 [genes_7_0] |
92 file = test-data/dm3_genes_withrgbandscore.bed.gz | 143 file = test-data/dm3_genes_withrgbandscore.bed.gz |
93 title = genes bed_rgb like - all_labels_inside | 144 title = genes bed_rgb like - all_labels_inside |
94 color = bed_rgb | 145 color = bed_rgb |
95 border_color = #000000 | 146 border_color = #000000 |
96 style = flybase | 147 style = flybase |
97 height_utr = 1.0 | 148 height_utr = 1.0 |
98 color_utr = bed_rgb | 149 color_utr = bed_rgb |
150 arrowhead_included = false | |
151 arrowhead_fraction = 0.004 | |
152 color_backbone = #000000 | |
99 display = stacked | 153 display = stacked |
100 height = 10.0 | 154 height = 10.0 |
101 labels = true | 155 labels = true |
102 all_labels_inside = true | 156 all_labels_inside = true |
157 labels_in_margin = false | |
158 fontstyle = normal | |
103 file_type = bed | 159 file_type = bed |
104 global_max_row = false | 160 global_max_row = false |
105 max_labels = 60 | 161 max_labels = 60 |
106 line_width = 0.5 | 162 line_width = 0.5 |
107 arrowhead_included = false | |
108 overlay_previous = no | 163 overlay_previous = no |