diff test-data/test1.ini @ 12:14e7c35f3d00 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 26f4478d873b339c5a1eccf18df68700a145a404

--- a/test-data/test1.ini	Sat Oct 01 08:43:22 2022 +0000
+++ b/test-data/test1.ini	Wed Jan 25 15:33:12 2023 +0000
@@ -1,6 +1,6 @@
 [x-axis]
 where = top
-[hic_section_0_0]
+[hic_section_1_0]
 file = test-data/Li_et_al_2015.h5
 file_type = hic_matrix
 title = Kc DpnII (Li et al. 2015)
@@ -9,7 +9,7 @@
 transform = log1p
 scale_factor = 1.0
 rasterize = true
-[tads_0_0]
+[tads_1_0]
 file = test-data/domains.bed
 file_type = domains
 border_color = black
@@ -17,7 +17,7 @@
 overlay_previous = share-y
 [spacer]
 height = 0.05
-[chrom states_2]
+[chrom states_3]
 file = test-data/tad_classification.bed
 title = TAD state
 color = bed_rgb
@@ -26,17 +26,15 @@
 height = 0.5
 line_width = 0.5
 file_type = bed
-[bedgraph_matrix_3]
+[bedgraph_matrix_4]
 file = test-data/tad_score.gz
 title = TAD separation score (Ramirez et al.)
 height = 10.0
+type = matrix
 file_type = bedgraph_matrix
-show_data_range = false
-plot_horizontal_lines = false
-pos_score_in_bin = center
 [spacer]
 height = 1.0
-[bedgraph_5]
+[bedgraph_6]
 file = test-data/bedgraph_chrx_2e6_5e6.bg
 title = bedgraph
 color = blue
@@ -48,7 +46,7 @@
 file_type = bedgraph
 type = fill
 overlay_previous = no
-[bigwig_6]
+[bigwig_7]
 file = test-data/bigwig_chrx_2e6_5e6.bw
 title = rep 1 test fill
 color = blue
@@ -60,7 +58,7 @@
 show_data_range = false
 file_type = bigwig
 overlay_previous = no
-[bigwig_7]
+[bigwig_8]
 file = test-data/bigwig_chrx_2e6_5e6.bw
 title = rep 1 test line
 color = red
@@ -72,7 +70,7 @@
 show_data_range = false
 file_type = bigwig
 overlay_previous = no
-[bigwig_8]
+[bigwig_9]
 file = test-data/bigwig_chrx_2e6_5e6.bw
 title = rep 1 test lw=0.2
 color = red
@@ -84,7 +82,7 @@
 show_data_range = false
 file_type = bigwig
 overlay_previous = no
-[bigwig_9]
+[bigwig_10]
 file = test-data/bigwig_chrx_2e6_5e6.bw
 title = rep 1 test point:0.5
 color = black
@@ -98,7 +96,7 @@
 overlay_previous = no
 [spacer]
 height = 0.5
-[genes_11_0]
+[genes_12_0]
 file = test-data/dm3_genes.bed.gz
 title = genes
 color = #000000
@@ -109,8 +107,8 @@
 display = stacked
 height = 5.0
 labels = true
+fontsize = 10
 file_type = bed
-fontsize = 10
 global_max_row = false
 max_labels = 60
 line_width = 0.5
@@ -118,7 +116,7 @@
 overlay_previous = no
 [spacer]
 height = 1.0
-[genes_13_0]
+[genes_14_0]
 file = test-data/dm3_genes.bed.gz
 title = max num rows 3
 color = #000000
@@ -139,7 +137,7 @@
 overlay_previous = no
 [spacer]
 height = 1.0
-[genes_15_0]
+[genes_16_0]
 file = test-data/dm3_genes.bed6.gz
 title = bed6 global max row
 color = #000000
@@ -157,6 +155,6 @@
 line_width = 0.5
 arrowhead_included = false
 overlay_previous = no
-[vlines_16]
+[vlines_17]
 file = test-data/domains.bed
-type = vlines
\ No newline at end of file
+type = vlines