Mercurial > repos > iuc > pygenometracks
diff test-data/first.maf @ 11:7dd841a32245 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit df07890f27c5d18e423ec889eadca82bd7958def
author | iuc |
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date | Sat, 01 Oct 2022 08:43:22 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/first.maf Sat Oct 01 08:43:22 2022 +0000 @@ -0,0 +1,987 @@ +##maf version=1 +a score=41100.0 +s mm10.chr2 34705072 4 + 182113224 G-AAG +s rn5.chr3 19096925 4 + 183740530 G-AAG +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114691 4 - 141213431 G-ACA +i hg19.chr9 I 195 I 6 + +a score=423183.0 +s mm10.chr2 34705076 25 + 182113224 AGGTGGAGA-------ACTATAGAATTTGAAA +s rn5.chr3 19096929 25 + 183740530 AGGCAGAGA-------ACTGTGGAGTTTGAAA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114701 25 - 141213431 AAATAAAAG-------GCTGTAAATCTTGAAG +i hg19.chr9 I 6 C 0 + +a score=66158.0 +s mm10.chr2 34705101 4 + 182113224 GTCT +s rn5.chr3 19096954 4 + 183740530 GGCT +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114726 4 - 141213431 TTCT +i hg19.chr9 C 0 C 0 + +a score=387811.0 +s mm10.chr2 34705105 18 + 182113224 AATATTGCTTTCA---GCAAA +s rn5.chr3 19096958 18 + 183740530 AATATTGCTTTCA---GCAAA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114730 18 - 141213431 AACACTGCTCTCA---GCAAA +i hg19.chr9 C 0 C 0 + +a score=10920.0 +s mm10.chr2 34705123 1 + 182113224 T +s rn5.chr3 19096976 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114748 1 - 141213431 T +i hg19.chr9 C 0 C 0 + +a score=-29032.0 +s mm10.chr2 34705124 7 + 182113224 GTCTTGA--- +s rn5.chr3 19096977 7 + 183740530 GTCCTAA--- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114749 2 - 141213431 -----AA--- +i hg19.chr9 C 0 C 0 + +a score=-6898.0 +s mm10.chr2 34705131 8 + 182113224 TTTA------AAAA +s rn5.chr3 19096984 8 + 183740530 TTTT------AAAA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114751 8 - 141213431 CTTT------AAAA +i hg19.chr9 C 0 I 1 + +a score=37882.0 +s mm10.chr2 34705139 24 + 182113224 AAAAATCTATGAGTGAAATG---AATA +s rn5.chr3 19096992 23 + 183740530 CGAATTC-ATGAATGAAATG---AATA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114760 24 - 141213431 AGATAAGTATGCAGAGGATG---GAAA +i hg19.chr9 I 1 C 0 + +a score=2589.0 +s mm10.chr2 34705163 1 + 182113224 T +s rn5.chr3 19097015 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114784 1 - 141213431 T +i hg19.chr9 C 0 C 0 + +a score=-36380.0 +s mm10.chr2 34705164 35 + 182113224 ATAATGCCATGAAAT--TGACTCTA-ATTTCT-AAATGT +s rn5.chr3 19097016 30 + 183740530 ATAATGCCACG-AAT--TAACTCTA-ATTTCT-AA---- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114785 32 - 141213431 -TTCAAACATAAAA---AAATTATT-A-ATCT-AAATGT +i hg19.chr9 C 0 C 0 + +a score=33050.0 +s mm10.chr2 34705199 17 + 182113224 ACTA-TTTTA--GACTACAG +s rn5.chr3 19097046 14 + 183740530 ---A-TCTTA--GACTACAG +i rn5.chr3 C 0 C 0 +s hg19.chr9 13114817 13 - 141213431 -----TTTTA--GTCTGAAG +i hg19.chr9 C 0 I 3470 + +a score=548.0 +s mm10.chr2 34705216 11 + 182113224 AACTCCCCCTC-- +s rn5.chr3 19097060 11 + 183740530 AACCCCCACTC-- +i rn5.chr3 C 0 C 0 + +a score=-4856.0 +s mm10.chr2 34705227 6 + 182113224 CCCAAA- +s rn5.chr3 19097071 6 + 183740530 CCAAAA- +i rn5.chr3 C 0 C 0 + +a score=87104.0 +s mm10.chr2 34705233 20 + 182113224 AGATAACCCTAACTAAGCAT +s rn5.chr3 19097077 16 + 183740530 AGATACCC----CTAAGCAC +i rn5.chr3 C 0 C 0 + +a score=1769.0 +s mm10.chr2 34705253 1 + 182113224 G +s rn5.chr3 19097093 1 + 183740530 G +i rn5.chr3 C 0 C 0 + +a score=-7449.0 +s mm10.chr2 34705254 3 + 182113224 TCT-- +s rn5.chr3 19097094 3 + 183740530 TCT-- +i rn5.chr3 C 0 C 0 + +a score=-9682.0 +s mm10.chr2 34705257 3 + 182113224 TAA +s rn5.chr3 19097097 3 + 183740530 TAA +i rn5.chr3 C 0 C 0 + +a score=45039.0 +s mm10.chr2 34705260 9 + 182113224 CACAACTAG +s rn5.chr3 19097100 9 + 183740530 CACAATTAG +i rn5.chr3 C 0 C 0 + +a score=4300.0 +s mm10.chr2 34705269 1 + 182113224 A +s rn5.chr3 19097109 1 + 183740530 A +i rn5.chr3 C 0 C 0 + +a score=135112.0 +s mm10.chr2 34705270 16 + 182113224 AA-T------ATTAAAATAG----GTA +s rn5.chr3 19097110 16 + 183740530 AA-T------ATTAAAATAG----GTA +i rn5.chr3 C 0 C 0 + +a score=171803.0 +s mm10.chr2 34705286 14 + 182113224 AGTATACAGAGACT +s rn5.chr3 19097126 14 + 183740530 AGTATAAAGATACC +i rn5.chr3 C 0 C 0 + +a score=59500.0 +s mm10.chr2 34705300 4 + 182113224 AAAA +s rn5.chr3 19097140 4 + 183740530 AAAA +i rn5.chr3 C 0 I 99 +s hg19.chr9 13118300 4 - 141213431 ggac +i hg19.chr9 I 3470 C 0 + +a score=26234.0 +s mm10.chr2 34705304 2 + 182113224 CT +s rn5.chr3 19097243 2 + 183740530 CT +i rn5.chr3 I 99 C 0 +s hg19.chr9 13118304 2 - 141213431 tt +i hg19.chr9 C 0 C 0 + +a score=4664.0 +s mm10.chr2 34705306 1 + 182113224 T +s rn5.chr3 19097245 1 + 183740530 T +i rn5.chr3 C 0 C 0 + +a score=10920.0 +s mm10.chr2 34705307 1 + 182113224 T +s rn5.chr3 19097246 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118306 1 - 141213431 t +i hg19.chr9 C 0 C 0 + +a score=10500.0 +s mm10.chr2 34705308 1 + 182113224 C +s rn5.chr3 19097247 1 + 183740530 C +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118307 1 - 141213431 c +i hg19.chr9 C 0 C 0 + +a score=1320.0 +s mm10.chr2 34705309 14 + 182113224 TCCACTCACGGATT---- +s rn5.chr3 19097248 14 + 183740530 TCCATTCATGGatt---- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118308 18 - 141213431 tctacacatggaattttt +i hg19.chr9 C 0 C 0 + +a score=8456.0 +s mm10.chr2 34705323 15 + 182113224 TCCTTATAACAGATT +s rn5.chr3 19097262 15 + 183740530 tcattatgacagatt +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118326 15 - 141213431 tcattatgactgaca +i hg19.chr9 C 0 C 0 + +a score=352.0 +s mm10.chr2 34705338 11 + 182113224 TCTAGAAGTAG--- +s hg19.chr9 13118341 11 - 141213431 cctagaagtgg--- +i hg19.chr9 C 0 C 0 + +a score=25195.0 +s mm10.chr2 34705349 194 + 182113224 TTCT-------------------TTTTTTTCCCCGCCTtttttttgagacagggtttctctgtgtagatcttg-------gctgtcctggaactcact--ctgtagac-caggctggccttgaactcagaaatccgcctgcctctgcctctgcctctgcctcccaagtgctgggattaaaggcttgcagcaccactgcctggcCtttttt-------ttttttttaaaga + +a score=0.0 +s mm10.chr2 34705543 173 + 182113224 tttattattatttatatgtaagtacactgtagctatcctcagacacaccagtagagggcatcagatgtcatttcagatggttgtaaaccaccatgtggttgctaggatttgaactcaggaccttcattagaacagtcagtgctcttaaccgctgaaccatctctccagccccC + +a score=1419.0 +s mm10.chr2 34705716 5 + 182113224 TCTAG +s rn5.chr3 19097277 5 + 183740530 tctag +i rn5.chr3 C 0 C 0 + +a score=23757.0 +s mm10.chr2 34705721 71 + 182113224 AAGTAGTTCTAACTGATCCAAATTTAGAATATGATCATCTAAGTCCCCAAGAACACATTGACAAGTTATGC +s rn5.chr3 19097282 71 + 183740530 aagtagttctaactgaaccaaatttagaatatgaacatttaagtccccacgtacacactgacaagttatgc +i rn5.chr3 C 0 I 271 +s hg19.chr9 13118352 65 - 141213431 ------aactaacctgactaaatttagaatgtgaacatttaagaccttaaatagatactgacaaagtatgt +i hg19.chr9 C 0 C 0 + +a score=1587.0 +s mm10.chr2 34705792 4 + 182113224 CCCA +s rn5.chr3 19097624 4 + 183740530 CCTG +i rn5.chr3 I 271 C 0 +s hg19.chr9 13118417 4 - 141213431 ccca +i hg19.chr9 C 0 I 76 + +a score=1744.0 +s mm10.chr2 34705796 49 + 182113224 CTTTGATTTTTAGGGCTTTGTTTT--GGTTGTTTTAGGATTTTTTTTTCTC +s rn5.chr3 19097628 51 + 183740530 CTTTGTTTTGTAGGAttttgcttttgggttttttcttctcttttttctttc +i rn5.chr3 C 0 C 0 + +a score=-3038.0 +s mm10.chr2 34705845 83 + 182113224 CTTTTT----CTTTCGTttttggttttttggatcaggactcactatgtagact-tggctgacctagaactcactatgtagaccaggca +s rn5.chr3 19097679 83 + 183740530 tttttt----gttttttttttttttttttggataaaggctcactctacagact-tggctgacttggaactcactatgtaagccaggca +i rn5.chr3 C 0 C 0 + +a score=-8755.0 +s mm10.chr2 34705928 42 + 182113224 agtctcaaactcatagatattccctg----gcctctatct---gagttc +s rn5.chr3 19097762 45 + 183740530 aatcttaaactcacagataatcccct----gcctccacctcctgagtgc +i rn5.chr3 C 0 C 0 + +a score=1299.0 +s mm10.chr2 34705970 3 + 182113224 tga +s rn5.chr3 19097807 3 + 183740530 tga +i rn5.chr3 C 0 C 0 + +a score=-2713.0 +s mm10.chr2 34705973 5 + 182113224 cattC +s rn5.chr3 19097810 5 + 183740530 tacaa +i rn5.chr3 C 0 C 0 + +a score=6695.0 +s mm10.chr2 34705978 1 + 182113224 T +s rn5.chr3 19097815 1 + 183740530 t +i rn5.chr3 C 0 C 0 + +a score=395.0 +s mm10.chr2 34705979 1 + 182113224 A +s rn5.chr3 19097816 1 + 183740530 a +i rn5.chr3 C 0 C 0 + +a score=28965.0 +s mm10.chr2 34705980 8 + 182113224 TAATTACC +s rn5.chr3 19097817 8 + 183740530 tgaTTACC +i rn5.chr3 C 0 C 0 + +a score=12376.0 +s mm10.chr2 34705988 1 + 182113224 T +s rn5.chr3 19097825 1 + 183740530 T +i rn5.chr3 C 0 C 0 + +a score=12907.0 +s mm10.chr2 34705989 1 + 182113224 T +s rn5.chr3 19097826 1 + 183740530 T +i rn5.chr3 C 0 C 0 + +a score=258.0 +s mm10.chr2 34705990 1 + 182113224 A +s rn5.chr3 19097827 1 + 183740530 A +i rn5.chr3 C 0 C 0 + +a score=29575.0 +s mm10.chr2 34705991 1 + 182113224 A +s rn5.chr3 19097828 1 + 183740530 A +i rn5.chr3 C 0 C 0 + +a score=18893.0 +s mm10.chr2 34705992 1 + 182113224 A +s rn5.chr3 19097829 1 + 183740530 A +i rn5.chr3 C 0 C 0 + +a score=395908.0 +s mm10.chr2 34705993 19 + 182113224 A-------AGCCATTCT------CACTCCTAC +s rn5.chr3 19097830 19 + 183740530 A-------GGTCATTCT------CACCCCCAC +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118497 19 - 141213431 A-------AGTCATCCT------CATTTCCCC +i hg19.chr9 I 76 C 0 +s sorAra1.scaffold_258498 5366 18 + 196505 A-------AGCCcctct------ttttcca-t +i sorAra1.scaffold_258498 N 0 C 0 + +a score=11678.0 +s mm10.chr2 34706012 1 + 182113224 A +s rn5.chr3 19097849 1 + 183740530 A +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118516 1 - 141213431 C +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5384 1 + 196505 t +i sorAra1.scaffold_258498 C 0 C 0 + +a score=41513.0 +s mm10.chr2 34706013 1 + 182113224 A +s rn5.chr3 19097850 1 + 183740530 A +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118517 1 - 141213431 T +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5385 1 + 196505 t +i sorAra1.scaffold_258498 C 0 C 0 + +a score=154000.0 +s mm10.chr2 34706014 1 + 182113224 C +s rn5.chr3 19097851 1 + 183740530 C +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118518 1 - 141213431 C +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5386 1 + 196505 c +i sorAra1.scaffold_258498 C 0 C 0 + +a score=98483.0 +s mm10.chr2 34706015 1 + 182113224 T +s rn5.chr3 19097852 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118519 1 - 141213431 T +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5387 1 + 196505 t +i sorAra1.scaffold_258498 C 0 C 0 + +a score=13020051.0 +s mm10.chr2 34706016 111 + 182113224 T--ACCATGGGCTATGTCATCCATATCT--GGACTAGTTACA-GAATCTTTGCCCCC-AAAATCA-GAGCTGCACTCAGA-TCTCAGGTCTTCGATCTTATTGGGAATATCCTCCGATG +s rn5.chr3 19097853 111 + 183740530 T--ACCATGGGCTATGTCATCCACATCT--GGACTAGTTACA-GAATCTTTACCCCC-AAAATCA-GAGCTGCACTCAGA-TCGCAGGTCTTCGATCTTATTGGGAATATCCTCCGATG +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118520 111 - 141213431 T--ACCGTGAGTTATTTCATCCATGTCT--GGACTAGTGACA-GAATCTTTACCCCC-AAAATCA-GAGCTGCACTCAGA-TCTCAGGTCTTCAATCTTATTGGGAATATCCTCAGAGG +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5388 111 + 196505 t--accATGAGTTACTTCATCCATGTCT--GGGCTAGTGACA-GAGTCTTTACCCCC-AAAGTCA-GAGCTGCACTCAGA-TCTCAGGTCTTCTATCTTATTAGGAATATCCTCAGAGG +i sorAra1.scaffold_258498 C 0 C 0 + +a score=1769347.0 +s mm10.chr2 34706127 14 + 182113224 TAGCACTTATACCT +s rn5.chr3 19097964 14 + 183740530 TAGCGCTTATGCCT +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118631 14 - 141213431 TTGCACTTATGCCT +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5499 14 + 196505 TTGCACTTATgcct +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-78567.0 +s mm10.chr2 34706141 7 + 182113224 TTAAA-------------------AA----- +s rn5.chr3 19097978 7 + 183740530 TTGAA-------------------AA----- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118645 7 - 141213431 TTAAA-------------------AA----- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5513 6 + 196505 tt-aa-------------------ag----- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-435240.0 +s mm10.chr2 34706148 8 + 182113224 ATACAGCA-------------------------------------- +s rn5.chr3 19097985 7 + 183740530 -TACAGCA-------------------------------------- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118652 1 - 141213431 -------A-------------------------------------- +i hg19.chr9 C 0 C 0 + +a score=-126692.0 +s mm10.chr2 34706156 2 + 182113224 A-A- +s rn5.chr3 19097992 2 + 183740530 A-A- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118653 2 - 141213431 C-A- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5519 2 + 196505 a-t- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-311071.0 +s mm10.chr2 34706158 6 + 182113224 A-A----TACA-- +s rn5.chr3 19097994 5 + 183740530 A------TACA-- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118655 3 - 141213431 A--------TA-- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5521 3 + 196505 a--------aa-- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-651211.0 +s mm10.chr2 34706164 10 + 182113224 TA--A--G----------------------------------------------------------------------------------------------TAAA--TA +s rn5.chr3 19097999 10 + 183740530 GA--A--G----------------------------------------------------------------------------------------------TAAA--TA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118658 10 - 141213431 GT--A--A----------------------------------------------------------------------------------------------AAAA--TA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5524 12 + 196505 at--a--a--------------------------------------------------------------------------------------------ttaaaa--ct +i sorAra1.scaffold_258498 C 0 C 0 + +a score=165149.0 +s mm10.chr2 34706174 5 + 182113224 AATAA +s rn5.chr3 19098009 4 + 183740530 AACA- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118668 4 - 141213431 AACA- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5536 2 + 196505 a--a- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=386714.0 +s mm10.chr2 34706179 12 + 182113224 GCTGCAAG----AAGA-------- +s rn5.chr3 19098013 9 + 183740530 ---GCAAG----AAGA-------- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118672 9 - 141213431 ---GGAAG----AAGA-------- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5538 13 + 196505 ---gcAAACTGGAACA-------- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=224266.0 +s mm10.chr2 34706191 6 + 182113224 CCAAAG-- +s rn5.chr3 19098022 6 + 183740530 ACAAAG-- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118681 6 - 141213431 ACAAAA-- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5551 6 + 196505 ACAAAA-- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=584015.0 +s mm10.chr2 34706197 35 + 182113224 TAGTTACAC-------AA---------------------------------------------------------------------------------A--ATTT--TATG---------AAG--TT-------------------------------T-GGAGAAA----------------------------------------------------TT-- +s rn5.chr3 19098028 36 + 183740530 CAGTTACAC-------AA---------------------------------------------------------------------------------A--ATTC--TACT---------AAG--TT-------------------------------TTGGATAAA----------------------------------------------------TC-- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118687 36 - 141213431 TATCCACAC-A-----AA---------------------------------------------------------------------------------A--AGTA--TATG---------AAA--TT-------------------------------T-GGAGAAA----------------------------------------------------CT-- +i hg19.chr9 C 0 I 4 +s sorAra1.scaffold_258498 5557 36 + 196505 TAAGCACAC-A-----GA---------------------------------------------------------------------------------A--AGTT--TATG---------AAG--TC-------------------------------T-GGAGAAA----------------------------------------------------GT-- +i sorAra1.scaffold_258498 C 0 I 4 + +a score=-1110372.0 +s mm10.chr2 34706232 43 + 182113224 CCTTTTC-------------------------------------------------AAA---CT--A---TC--CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------CTACAC------ATGTGA-GTTGCTGAGTGCT-------- +s rn5.chr3 19098064 37 + 183740530 CCTCCTC-------------------------------------------------GAG---CT--G---TC--CAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTGA-GCTGCCGAGTGCT-------- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118727 47 - 141213431 CATTCTC-------------------------------------------------GAA---TT--T---TG--T----------------------------GTCCCAGT--TC------------------------------------------------------------------------------------------------------------------------TATAC------ATGTGA----GTTTAGTATT-------- +i hg19.chr9 I 4 C 0 +s sorAra1.scaffold_258498 5597 51 + 196505 TACCCTC-------------------------------------------------AATT--GT--T---TG--T----------------------------GTCCAGTTC-TA------------------------------------------------------------------------------------------------------------------------CACAC------AAGGGA-GCTG-CCGGTGTT-------- +i sorAra1.scaffold_258498 I 4 C 0 + +a score=-57305.0 +s mm10.chr2 34706275 9 + 182113224 G-------------------GCAAGTTA +s rn5.chr3 19098101 9 + 183740530 G-------------------CCACCTCA +i rn5.chr3 C 0 C 0 + +a score=-785463.0 +s mm10.chr2 34706284 23 + 182113224 CCAC--------------------------------------------------------------------------TGTTA----TTCAAACACACT----TA----------- +s rn5.chr3 19098110 23 + 183740530 CCAC--------------------------------------------------------------------------TGCTG----TCCAAGTACACT----TA----------- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118774 35 - 141213431 -------------------------------------------------------ATATCCTT---TA-T-GGTA--CTACTG----CTTAAATATACT----TA----------- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5648 36 + 196505 -------------------------------------------------------TCGGCTTT---TATC-AGTA--CTACTG----CTTAAATATGAT----TA----------- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=38342.0 +s mm10.chr2 34706307 6 + 182113224 TCTTGC- +s rn5.chr3 19098133 6 + 183740530 TCTTGC- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118809 6 - 141213431 CCTTGC- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5684 5 + 196505 C-CCGA- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=173064.0 +s mm10.chr2 34706313 10 + 182113224 T-TTATACAAT +s rn5.chr3 19098139 8 + 183740530 T---ATACAGC +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118815 10 - 141213431 T-TTACACAAC +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5689 7 + 196505 T-GTGTGC--- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=110922.0 +s mm10.chr2 34706323 13 + 182113224 ATCATC------------------------------------------AGA---ATT-A +s rn5.chr3 19098147 13 + 183740530 AGCATC------------------------------------------AAA---AGT-T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118825 13 - 141213431 ATAATC------------------------------------------AGA---ATC-G +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5696 12 + 196505 -AAAAT------------------------------------------ATC---CAA-G +i sorAra1.scaffold_258498 C 0 I 1 + +a score=-155855.0 +s mm10.chr2 34706336 16 + 182113224 CACGC----T----ATAC-----CTAAAT +s rn5.chr3 19098160 15 + 183740530 CATGC----T----GTAC-----CTAA-T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118838 14 - 141213431 --TAC----A----ATTC-----TAAAGT +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5709 16 + 196505 TACAT----G----CTCT-----GTACAC +i sorAra1.scaffold_258498 I 1 I 5 + +a score=5448.0 +s mm10.chr2 34706352 3 + 182113224 ATC +s rn5.chr3 19098175 3 + 183740530 ATT +i rn5.chr3 C 0 C 0 + +a score=-7915.0 +s mm10.chr2 34706355 2 + 182113224 GT- +s rn5.chr3 19098178 2 + 183740530 GT- +i rn5.chr3 C 0 C 0 + +a score=592160.0 +s mm10.chr2 34706357 20 + 182113224 AGCAAAAGC-----TAT-CAAAAA----TA +s rn5.chr3 19098180 20 + 183740530 AGCAGAAGC-----TAC-CAAAAG----TA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118852 20 - 141213431 AGGACAGGC-----TAC-TAAGAA----CA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5730 20 + 196505 AGCAGAAGC-----TAT-GCAGTA----CA +i sorAra1.scaffold_258498 I 5 C 0 + +a score=-246926.0 +s mm10.chr2 34706377 6 + 182113224 TCA-----A--------GA +s rn5.chr3 19098200 6 + 183740530 TCG-----A--------AA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118872 6 - 141213431 GAA-----A--------CA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5750 4 + 196505 GAT-----A---------- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-935672.0 +s mm10.chr2 34706383 18 + 182113224 GCTG------------------AA--------AG---AGGAG-----------------------CAGCA +s rn5.chr3 19098206 17 + 183740530 GCTG------------------AA---------G---AAGAA-----------------------CAGTT +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118878 17 - 141213431 GTTG------------------TA---------G---AGAGA-----------------------CTGTT +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5754 20 + 196505 ----------------------GT---------C---AGGGAA---CA---CAC-----A-----TGAGC +i sorAra1.scaffold_258498 C 0 C 0 + +a score=499767.0 +s mm10.chr2 34706401 25 + 182113224 CGTCCA--TTATTTT----AACAGGCTGTA--A +s rn5.chr3 19098223 23 + 183740530 CGTCAG--TTATC------AATAGGCTGTG--A +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118895 26 - 141213431 TGCCAA--TTACTTC----AACAGGCTCCAT-A +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5774 26 + 196505 TGCAAA--TTACTTT----AATGAGCTCTGC-G +i sorAra1.scaffold_258498 C 0 C 0 + +a score=767553.0 +s mm10.chr2 34706426 54 + 182113224 A----AGC------CACATATT--AAGTT----CTCAAAGA----TTAT------------G-AAG-GCATAAAATTAAT-TTTTTTCC +s rn5.chr3 19098246 54 + 183740530 A----AGC------TACACATT--AGGTT----CTCAAAGA----TTAT------------G-AAA-GCGTAAAATTGAT-TTTGTTCC +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118921 55 - 141213431 A----GGC------CACACATT--AAGTT----CTCAAAGAT---TTCA------------G-GTG-CAATGGAAATAAG-TTTGTTTT +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5800 55 + 196505 A----AGC------CGCACATT--AAGCT----CTCATAGCT---ATTT------------G-GTA-CCCTAGAAATAAT-TTCATTCC +i sorAra1.scaffold_258498 C 0 C 0 + +a score=512662.0 +s mm10.chr2 34706480 12 + 182113224 CTGG-GGACTACT +s rn5.chr3 19098300 12 + 183740530 CTGG-AGACTACT +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118976 12 - 141213431 CTGG-AAATTACT +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5855 12 + 196505 CTGG-AAATCACC +i sorAra1.scaffold_258498 C 0 C 0 + +a score=266794.0 +s mm10.chr2 34706492 19 + 182113224 GAG-AACTTAAATAA-CATA--T +s rn5.chr3 19098312 19 + 183740530 GAG-CTCTTAAATAA-CACA--T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13118988 19 - 141213431 CAG-CTCTTAAATAT-AACA--T +i hg19.chr9 C 0 I 2 +s sorAra1.scaffold_258498 5867 1 + 196505 C---------------------- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=43661.0 +s mm10.chr2 34706511 4 + 182113224 CT--CT +s rn5.chr3 19098331 4 + 183740530 CT--CT +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119009 4 - 141213431 CT--TT +i hg19.chr9 I 2 C 0 + +a score=10868.0 +s mm10.chr2 34706515 1 + 182113224 T +s rn5.chr3 19098335 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119013 1 - 141213431 T +i hg19.chr9 C 0 C 0 + +a score=-67977.0 +s mm10.chr2 34706516 23 + 182113224 gggggtggagatacagctcag----------------tg +s rn5.chr3 19098336 23 + 183740530 ggggacaaagctacagctcag----------------tg +i rn5.chr3 C 0 C 0 + +a score=-16667.0 +s mm10.chr2 34706539 4 + 182113224 at---ga +s rn5.chr3 19098359 5 + 183740530 ac--aga +i rn5.chr3 C 0 C 0 + +a score=-47800.0 +s mm10.chr2 34706543 9 + 182113224 acacatgac +s rn5.chr3 19098364 9 + 183740530 gcacatgac +i rn5.chr3 C 0 C 0 +s sorAra1.scaffold_258498 5868 9 + 196505 GCTGGTAAT +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-120172.0 +s mm10.chr2 34706552 20 + 182113224 taacatgtcccaagtt--------------------ctgg +s rn5.chr3 19098373 20 + 183740530 taacatgtcccgagtt--------------------ctga +i rn5.chr3 C 0 C 0 + +a score=-60366.0 +s mm10.chr2 34706572 21 + 182113224 gttcaacagatagtacca-------------------------------------------------------tac +s rn5.chr3 19098393 18 + 183740530 gttcaacagccagcacca---------------------------------------------------------- +i rn5.chr3 C 0 C 0 +s sorAra1.scaffold_258498 5877 5 + 196505 -------------TATCA---------------------------------------------------------- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-3306.0 +s mm10.chr2 34706593 3 + 182113224 cat-- + +a score=-199980.0 +s mm10.chr2 34706596 23 + 182113224 aa------aacAGCCAACAAAACCC-AGTT-------------- +s rn5.chr3 19098411 18 + 183740530 ----------gcagcaacaaaaCCC-AGT--------------- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119014 7 - 141213431 ------------------TGTATCA------------------- +i hg19.chr9 C 0 C 0 + +a score=21021.0 +s mm10.chr2 34706619 1 + 182113224 A +s rn5.chr3 19098429 1 + 183740530 A +i rn5.chr3 C 0 C 0 + +a score=28151.0 +s mm10.chr2 34706620 3 + 182113224 TCT +s rn5.chr3 19098430 3 + 183740530 TCT +i rn5.chr3 C 0 C 0 + +a score=21179.0 +s mm10.chr2 34706623 3 + 182113224 CTT- +s rn5.chr3 19098433 3 + 183740530 CTT- +i rn5.chr3 C 0 C 0 + +a score=-542671.0 +s mm10.chr2 34706626 14 + 182113224 TGG-TAAC-----AC------------T--------TTAT-------- +s rn5.chr3 19098436 14 + 183740530 TGG-TAAC-----AC------------T--------TTAT-------- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119021 7 - 141213431 -------------AC------------T--------TTAT-------- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5882 7 + 196505 -------------AC------------A--------TTAT-------- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-12000.0 +s mm10.chr2 34706640 5 + 182113224 AAAC-A +s rn5.chr3 19098450 5 + 183740530 AAAC-A +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119028 5 - 141213431 AAAT-A +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5889 5 + 196505 ACAC-G +i sorAra1.scaffold_258498 C 0 C 0 + +a score=112347.0 +s mm10.chr2 34706645 2 + 182113224 GA +s rn5.chr3 19098455 2 + 183740530 GA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119033 2 - 141213431 GG +i hg19.chr9 C 0 I 7 +s sorAra1.scaffold_258498 5894 2 + 196505 GG +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-75428.0 +s mm10.chr2 34706647 10 + 182113224 AAGA-AGGGGA +s rn5.chr3 19098457 10 + 183740530 AAGA-AGGGGA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119042 10 - 141213431 AGGG-GGTGAA +i hg19.chr9 I 7 C 0 +s sorAra1.scaffold_258498 5896 10 + 196505 GTGG-TAGGAA +i sorAra1.scaffold_258498 C 0 C 0 + +a score=26690.0 +s mm10.chr2 34706657 1 + 182113224 T +s rn5.chr3 19098467 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119052 1 - 141213431 C +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5906 1 + 196505 C +i sorAra1.scaffold_258498 C 0 I 2 + +a score=582929.0 +s mm10.chr2 34706658 21 + 182113224 GCCTTCAAA--------------------TTCCTAGC----CCTT +s rn5.chr3 19098468 21 + 183740530 GCCTTCAAA--------------------TTCCTAGT----CCTT +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119053 21 - 141213431 ACCTTCAAA--------------------TCCCTACT----CCTT +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5909 21 + 196505 ACCTTCCAA--------------------TCCTTATT----CCTT +i sorAra1.scaffold_258498 I 2 C 0 + +a score=357258.0 +s mm10.chr2 34706679 6 + 182113224 AAAAC---------------------------------A--- +s rn5.chr3 19098489 6 + 183740530 AAAAC---------------------------------A--- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119074 6 - 141213431 AAAAC---------------------------------A--- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5930 6 + 196505 AAAAC---------------------------------A--- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=522064.0 +s mm10.chr2 34706685 8 + 182113224 AGA-C-AGAC +s rn5.chr3 19098495 8 + 183740530 AGA-C-AGAC +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119080 8 - 141213431 AGA-C-AGAC +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5936 8 + 196505 AGA-C-AGAC +i sorAra1.scaffold_258498 C 0 C 0 + +a score=75873.0 +s mm10.chr2 34706693 1 + 182113224 A +s rn5.chr3 19098503 1 + 183740530 A +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119088 1 - 141213431 A +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5944 1 + 196505 A +i sorAra1.scaffold_258498 C 0 C 0 + +a score=117040.0 +s mm10.chr2 34706694 1 + 182113224 T +s rn5.chr3 19098504 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119089 1 - 141213431 T +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5945 1 + 196505 T +i sorAra1.scaffold_258498 C 0 C 0 + +a score=18601995.0 +s mm10.chr2 34706695 141 + 182113224 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTGCTG-CCCAGTCCAGAACAG---CTCT-CCAGCTCTTGGAGGCGCTCTTCCTGCTTTAAGTCTGGAGCCTCTGA +s rn5.chr3 19098505 141 + 183740530 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTACTG-CCCAGTCCAGAACAG---CTCT-CCAGCTCTTGGAGGCGCTCTTCCTGCTTTAAGTCTGGAGCCTCTGC +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119090 141 - 141213431 A-CCGGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTATCATCA-GATGTGCTA-CCCAGTCCAGAACAG---CTCT-CCAGTTCTTGCAGACGCTCCTCCTGCTTTAGGTCTGGGGCCTCTAA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 5946 141 + 196505 A-CCCGACACAAC-ACTGAGG--CCTGGT-GTGC-TGGGGC-GGGAA--CTGACCTCCCTGAC-ATCCGTGTCGTCA-GAGGTGCTG-CCCAGGCCGGAACAG---CTCT-CCAGCTCCTGCAGACGCTCCTCCTGCTTCAGGTCTGGGGCTTCTAG +i sorAra1.scaffold_258498 C 0 C 0 + +a score=93544.0 +s mm10.chr2 34706836 1 + 182113224 A +s rn5.chr3 19098646 1 + 183740530 A +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119231 1 - 141213431 A +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6087 1 + 196505 G +i sorAra1.scaffold_258498 C 0 C 0 + +a score=265691.0 +s mm10.chr2 34706837 6 + 182113224 CAGAAA- +s rn5.chr3 19098647 6 + 183740530 CAGAGA- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119232 6 - 141213431 TAGAAG- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6088 6 + 196505 GAAAGA- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=100475.0 +s mm10.chr2 34706843 1 + 182113224 A +s rn5.chr3 19098653 1 + 183740530 A +i rn5.chr3 C 0 I 41 +s hg19.chr9 13119238 1 - 141213431 A +i hg19.chr9 C 0 I 45 +s sorAra1.scaffold_258498 6094 1 + 196505 G +i sorAra1.scaffold_258498 C 0 I 41 + +a score=123198.0 +s mm10.chr2 34706844 2 + 182113224 CA +s rn5.chr3 19098695 2 + 183740530 CA +i rn5.chr3 I 41 C 0 +s hg19.chr9 13119284 2 - 141213431 CA +i hg19.chr9 I 45 C 0 +s sorAra1.scaffold_258498 6136 2 + 196505 CC +i sorAra1.scaffold_258498 I 41 C 0 + +a score=83667.0 +s mm10.chr2 34706846 1 + 182113224 G +s rn5.chr3 19098697 1 + 183740530 G +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119286 1 - 141213431 G +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6138 1 + 196505 A +i sorAra1.scaffold_258498 C 0 C 0 + +a score=30972.0 +s mm10.chr2 34706847 1 + 182113224 C +s rn5.chr3 19098698 1 + 183740530 C +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119287 1 - 141213431 C +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6139 1 + 196505 C +i sorAra1.scaffold_258498 C 0 C 0 + +a score=74745.0 +s mm10.chr2 34706848 1 + 182113224 T +s rn5.chr3 19098699 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119288 1 - 141213431 T +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6140 1 + 196505 T +i sorAra1.scaffold_258498 C 0 C 0 + +a score=223036.0 +s mm10.chr2 34706849 11 + 182113224 TT------TG-TG--ACT-TA +s rn5.chr3 19098700 11 + 183740530 TT------TG-TG--ACT-TA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119289 11 - 141213431 TT------TG-TG--ACC-CA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6141 11 + 196505 TC------CG-TG--ACC-CA +i sorAra1.scaffold_258498 C 0 C 0 + +a score=3047381.0 +s mm10.chr2 34706860 139 + 182113224 GACATACAAG---C-------G-ATT-GGGG----AATAAA-GAGAT---TT----------A-------TAAG------CCTAAGCTACTT-AGC-AAAG-CTAGTTAG---ATCA---TAGTTTAAAGAAGAT-A---AGGTTATGA--TTTC-CTCCTGATA-----TACACACT---AGTTTGT----------TATGTACAG-ATGTCAAC---T +s rn5.chr3 19098711 134 + 183740530 G----AGAAG---C-------C-ACT-GGGG----AATACC-TAGCT---TT----------A-------TAAG------TCTAAGTTACTC-ACC-AAAA-CTTGTTAG---ATCA---TAGATT-AAGAAGGC-A---AGGTTATAA--TTTC-CCCCTGATA-----TACACACT---AATTTGC----------TATGCACAG-ACGACAAC---T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119300 149 - 141213431 G----ATAAA---CAAAG--CT-ACC-AGGG----CATGAA-TAAAA---TCAGTG-CAAATACATGTG-TAAG------TCTGGACTAGTT-----AATG-CTAGTTAG---ATTA---AGTGTT----AAGTC-A---AAGTTGTGAT-TTTC-ATCCCAATA-----TAAGC--C---AGTTCAC----------TGTGCACAG-ATGAAAAC-GTG +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6152 151 + 196505 G----CTGAA---GAAAA--CTGAAC-AGGG----CTT--A-CGGAAGGGTCAGTG-TAAATAGATTTC-TAGG------TCTCGGCCAGTT-AGT-AAGG-CTGGTT-G---AAGA---AACGCCAAGGAAGTC-ATATCAACTCTGAT-TTTC--CCCCAGCA-----TAGGC--C---AGT----------------TGTACAG-ATAAAAAC-T-- +i sorAra1.scaffold_258498 C 0 I 2 + +a score=-43731.0 +s mm10.chr2 34706999 2 + 182113224 AT- +s rn5.chr3 19098845 2 + 183740530 GT- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119449 1 - 141213431 G-- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6305 2 + 196505 GG- +i sorAra1.scaffold_258498 I 2 C 0 + +a score=126153.0 +s mm10.chr2 34707001 4 + 182113224 TTCT- +s rn5.chr3 19098847 4 + 183740530 TTCT- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119450 4 - 141213431 TTCT- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6307 4 + 196505 TTTT- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=311713.0 +s mm10.chr2 34707005 8 + 182113224 AGAATACT +s rn5.chr3 19098851 8 + 183740530 AGACTACT +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119454 8 - 141213431 AGATCACT +i hg19.chr9 C 0 I 4 +s sorAra1.scaffold_258498 6311 8 + 196505 AGATCACT +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-2161.0 +s mm10.chr2 34707013 2 + 182113224 TT +s rn5.chr3 19098859 2 + 183740530 CT +i rn5.chr3 C 0 I 199 +s hg19.chr9 13119466 1 - 141213431 -T +i hg19.chr9 I 4 I 1 + +a score=-432190.0 +s mm10.chr2 34707015 20 + 182113224 AAAGAAAAAAAAAAGCG------------AT----------T--------------- +s rn5.chr3 19099060 26 + 183740530 aaacaaaacaaaacaaa------------acTGTA----CAT--------------- +i rn5.chr3 I 199 C 0 +s hg19.chr9 13119468 11 - 141213431 ---------------------------ACAGAGTA----TGC--------------- +i hg19.chr9 I 1 C 0 +s sorAra1.scaffold_258498 6319 17 + 196505 -------------------ATT--CTCAATGAGTG----TGC--------------- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=221858.0 +s mm10.chr2 34707035 6 + 182113224 TCTTGG +s rn5.chr3 19099086 6 + 183740530 TCTTGG +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119479 6 - 141213431 TATTGA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6336 5 + 196505 TAC-GG +i sorAra1.scaffold_258498 C 0 C 0 + +a score=458493.0 +s mm10.chr2 34707041 12 + 182113224 TTAACACGTAAA- +s rn5.chr3 19099092 12 + 183740530 TTAACACATAAA- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119485 12 - 141213431 TTAACATGTGAA- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6341 12 + 196505 CTAACATGAAAA- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=67988.0 +s mm10.chr2 34707053 8 + 182113224 CTA---ATCAA +s rn5.chr3 19099104 5 + 183740530 CTG------AA +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119497 5 - 141213431 CTG------GA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6353 5 + 196505 CTG------AA +i sorAra1.scaffold_258498 C 0 C 0 + +a score=123485.0 +s mm10.chr2 34707061 3 + 182113224 TAG +s rn5.chr3 19099109 3 + 183740530 CAG +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119502 3 - 141213431 CAA +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6358 3 + 196505 CAA +i sorAra1.scaffold_258498 C 0 C 0 + +a score=33526.0 +s mm10.chr2 34707064 4 + 182113224 GA--GC-- +s rn5.chr3 19099112 4 + 183740530 GA--GC-- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119505 6 - 141213431 GAGAGT-- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6361 6 + 196505 GAACGC-- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=167903.0 +s mm10.chr2 34707068 8 + 182113224 A-CAGAAT--A +s rn5.chr3 19099116 8 + 183740530 A-CAGAAT--A +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119511 8 - 141213431 A-TGGAAT--A +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6367 7 + 196505 A-GAGAAG--- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=2760.0 +s mm10.chr2 34707076 1 + 182113224 A +s rn5.chr3 19099124 1 + 183740530 G +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119519 1 - 141213431 G +i hg19.chr9 C 0 C 0 + +a score=-203.0 +s mm10.chr2 34707077 4 + 182113224 TATA--- +s rn5.chr3 19099125 3 + 183740530 TGT---- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119520 3 - 141213431 CCT---- +i hg19.chr9 C 0 C 0 + +a score=73448.0 +s mm10.chr2 34707081 10 + 182113224 CAACACTGTA--- +s rn5.chr3 19099128 9 + 183740530 -AACACTGTA--- +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119523 9 - 141213431 -GGTATTAAA--- +i hg19.chr9 C 0 C 0 +s sorAra1.scaffold_258498 6374 1 + 196505 ---------A--- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-28287.0 +s mm10.chr2 34707091 5 + 182113224 TCAA---C +s rn5.chr3 19099137 7 + 183740530 TCCACT-C +i rn5.chr3 C 0 C 0 +s sorAra1.scaffold_258498 6375 5 + 196505 TCAAC--- +i sorAra1.scaffold_258498 C 0 C 0 + +a score=4831.0 +s mm10.chr2 34707096 1 + 182113224 T +s rn5.chr3 19099144 1 + 183740530 T +i rn5.chr3 C 0 C 0 +s hg19.chr9 13119532 1 - 141213431 T +i hg19.chr9 C 0 I 709 +s sorAra1.scaffold_258498 6380 1 + 196505 T +i sorAra1.scaffold_258498 C 0 I 1 + +a score=555.0 +s mm10.chr2 34707097 1 + 182113224 C +s rn5.chr3 19099145 1 + 183740530 C +i rn5.chr3 C 0 C 0 + +a score=18165.0 +s mm10.chr2 34707098 3 + 182113224 TCT +s rn5.chr3 19099146 3 + 183740530 TCT +i rn5.chr3 C 0 C 0 +s sorAra1.scaffold_258498 6382 2 + 196505 -TT +i sorAra1.scaffold_258498 I 1 C 0 + +a score=32760.0 +s mm10.chr2 34707101 3 + 182113224 AAA +s rn5.chr3 19099149 3 + 183740530 AAA +i rn5.chr3 C 0 C 0 +s sorAra1.scaffold_258498 6384 3 + 196505 AAA +i sorAra1.scaffold_258498 C 0 C 0 + +a score=-12377.0 +s mm10.chr2 34707104 8 + 182113224 TCTCAATG +s rn5.chr3 19099152 8 + 183740530 GTTCAATG +i rn5.chr3 C 0 C 0 +s sorAra1.scaffold_258498 6387 6 + 196505 --TTTAAA +i sorAra1.scaffold_258498 C 0 I 672 + +a score=13142.0 +s mm10.chr2 34707112 17 + 182113224 ttctcaaaagcacttaa--- +s rn5.chr3 19099160 17 + 183740530 TTTTCAAAAGCACTTAC--- +i rn5.chr3 C 0 C 0 + +a score=2730.0 +s mm10.chr2 34707129 2 + 182113224 aa +s rn5.chr3 19099177 2 + 183740530 AA +i rn5.chr3 C 0 C 0 + +a score=1746.0 +s mm10.chr2 34707131 3 + 182113224 tgg +s rn5.chr3 19099179 3 + 183740530 Tgg +i rn5.chr3 C 0 C 0 + +a score=1998.0 +s mm10.chr2 34707134 22 + 182113224 gcat------gaca--gcagggcaatctca +s rn5.chr3 19099182 24 + 183740530 gcat------gatattgcagggcactctca +i rn5.chr3 C 0 C 0 + +a score=452.0 +s mm10.chr2 34707156 4 + 182113224 acac +s rn5.chr3 19099206 4 + 183740530 gcac +i rn5.chr3 C 0 C 0 + +a score=8445.0 +s mm10.chr2 34707160 152 + 182113224 tcaataagcagaggcaggtggatctctgtgagtttgagtccagcctaaaatacactggcagttccatgaatagcctgagctacatgacgagatcctgtctcaaaCTAGCTCCAAAAAGGAAGACAGG-AAAATCATTTCTTTACTTAATACTT +s rn5.chr3 19099210 147 + 183740530 tcaagaggcagaggcaggtgga--tctgtaagtctgaggccagcctgaggttcactggcagttcca-gcatagcctgagctacatgatgagaccctggctcaaaccaa---aagaaaGAAAGAAAGGAAAAATGATTTCTTTATCTAATATTT +i rn5.chr3 C 0 I 1 + +a score=0.0 +s mm10.chr2 34707312 6 + 182113224 TACCTA +