diff test-data/test1.ini @ 5:eca03db4f612 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 9471ad965cd7c88c96a03c97fc1cdfe17f379c95"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test1.ini	Wed Jan 08 09:15:19 2020 -0500
@@ -0,0 +1,162 @@
+[x-axis]
+where = top
+[hic_section_0_0]
+file = test-data/Li_et_al_2015.h5
+file_type = hic_matrix
+title = Kc DpnII (Li et al. 2015)
+depth = 200000
+colormap = RdYlBu_r
+transform = log1p
+scale_factor = 1.0
+rasterize = true
+[tads_0_0]
+file = test-data/domains.bed
+file_type = domains
+border_color = black
+color = none
+overlay_previous = share-y
+[spacer]
+height = 0.05
+[chrom states_2]
+file = test-data/tad_classification.bed
+title = TAD state
+color = bed_rgb
+border_color = #000000
+display = collapsed
+height = 0.5
+line_width = 0.5
+file_type = bed
+[bedgraph_matrix_3]
+file = test-data/tad_score.gz
+title = TAD separation score (Ramirez et al.)
+height = 10.0
+file_type = bedgraph_matrix
+show_data_range = false
+plot_horizontal_lines = false
+pos_score_in_bin = center
+[spacer]
+height = 1.0
+[bedgraph_5]
+file = test-data/bedgraph_chrx_2e6_5e6.bg
+title = bedgraph
+color = blue
+alpha = 1.0
+height = 4.0
+show_data_range = false
+nans_to_zeros = false
+use_middle = false
+file_type = bedgraph
+type = fill
+overlay_previous = no
+[bigwig_6]
+file = test-data/bigwig_chrx_2e6_5e6.bw
+title = rep 1 test fill
+color = blue
+alpha = 1.0
+height = 4.0
+summary_method = mean
+nans_to_zeros = false
+type = fill
+show_data_range = false
+file_type = bigwig
+overlay_previous = no
+[bigwig_7]
+file = test-data/bigwig_chrx_2e6_5e6.bw
+title = rep 1 test line
+color = red
+alpha = 1.0
+height = 4.0
+summary_method = mean
+nans_to_zeros = false
+type = line:1.0
+show_data_range = false
+file_type = bigwig
+overlay_previous = no
+[bigwig_8]
+file = test-data/bigwig_chrx_2e6_5e6.bw
+title = rep 1 test lw=0.2
+color = red
+alpha = 1.0
+height = 4.0
+summary_method = mean
+nans_to_zeros = false
+type = line:0.1
+show_data_range = false
+file_type = bigwig
+overlay_previous = no
+[bigwig_9]
+file = test-data/bigwig_chrx_2e6_5e6.bw
+title = rep 1 test point:0.5
+color = black
+alpha = 1.0
+height = 4.0
+summary_method = mean
+nans_to_zeros = false
+type = points:0.5
+show_data_range = false
+file_type = bigwig
+overlay_previous = no
+[spacer]
+height = 0.5
+[genes_11_0]
+file = test-data/dm3_genes.bed.gz
+title = genes
+color = #000000
+border_color = #000000
+style = flybase
+height_utr = 1.0
+color_utr = grey
+display = stacked
+height = 5.0
+labels = true
+file_type = bed
+fontsize = 10
+global_max_row = false
+max_labels = 60
+line_width = 0.5
+arrowhead_included = false
+overlay_previous = no
+[spacer]
+height = 1.0
+[genes_13_0]
+file = test-data/dm3_genes.bed.gz
+title = max num rows 3
+color = #000000
+border_color = #000000
+style = flybase
+height_utr = 1.0
+color_utr = grey
+display = stacked
+height = 3.0
+labels = true
+file_type = bed
+fontsize = 8
+gene_rows = 3
+global_max_row = false
+max_labels = 60
+line_width = 0.5
+arrowhead_included = false
+overlay_previous = no
+[spacer]
+height = 1.0
+[genes_15_0]
+file = test-data/dm3_genes.bed6.gz
+title = bed6 global max row
+color = #000000
+border_color = #000000
+style = flybase
+height_utr = 1.0
+color_utr = grey
+display = stacked
+height = 20.0
+labels = true
+file_type = bed
+fontsize = 10
+global_max_row = true
+max_labels = 60
+line_width = 0.5
+arrowhead_included = false
+overlay_previous = no
+[vlines_16]
+file = test-data/domains.bed
+type = vlines
\ No newline at end of file