view test-data/test9.ini @ 12:14e7c35f3d00 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit 26f4478d873b339c5a1eccf18df68700a145a404

[x-axis]
where = top
[genes_1_0]
file = dm3_subset_BDGP5.78.gtf.gz
prefered_name = transcript_name
merge_transcripts = false
title = defaut arrowhead fontstyle italic
color = #000000
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = grey
arrowhead_included = false
arrowhead_fraction = 0.004
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = italic
file_type = gtf
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[spacer]
height = 1.0
[genes_2_0]
file = dm3_subset_BDGP5.78.gtf.gz
prefered_name = transcript_name
merge_transcripts = false
title = arrowhead_fraction 0.1 fontstyle oblique
color = #000000
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = grey
arrowhead_included = false
arrowhead_fraction = 0.1
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = oblique
file_type = gtf
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[spacer]
height = 1.0
[genes_3_0]
file = dm3_subset_BDGP5.78_asbed4.bed.gz
title = genes without orientation
color = red
border_color = #000000
style = UCSC
arrow_interval = 2
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = normal
file_type = bed
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[spacer]
height = 1.0
[genes_4_0]
file = dm3_subset_BDGP5.78.gtf.gz
prefered_name = transcript_name
merge_transcripts = false
title = arrowhead included
color = red
border_color = #000000
style = flybase
height_utr = 1.0
color_utr = grey
arrowhead_included = true
arrowhead_fraction = 0.004
display = stacked
height = 10.0
labels = true
all_labels_inside = false
labels_in_margin = false
fontstyle = normal
file_type = gtf
global_max_row = false
max_labels = 60
line_width = 0.5
overlay_previous = no
[spacer]
height = 1.0
[vlines_5]
file = dm3_subset_BDGP5.78_asbed4.bed.gz
line_width = 2
zorder = 100
color = red
type = vlines
[vlines_6]
file = dm3_genes_end.bed
line_width = 5
zorder = -100
color = blue
line_style = solid
type = vlines