Mercurial > repos > iuc > pygenometracks
changeset 0:2074627b0f83 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pygenometracks commit a68062b7e444233416bd30404be9bf92b6f1a363
| author | iuc |
|---|---|
| date | Sat, 23 Jun 2018 02:28:35 -0400 |
| parents | |
| children | 0ea86f6bf2a1 |
| files | macros.xml pyGenomeTracks.xml static/images/pyGenomeTracks.png test-data/Li_et_al_2015.h5 test-data/bedgraph_chrx_2e6_5e6.bg test-data/bigwig_chrx_2e6_5e6.bw test-data/bigwig_multiple.png test-data/dm3_genes.bed.gz test-data/dm3_genes.bed6.gz test-data/domains.bed test-data/master_TADs_plot.png test-data/tad_classification.bed test-data/tad_score.gz |
| diffstat | 13 files changed, 15469 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Sat Jun 23 02:28:35 2018 -0400 @@ -0,0 +1,210 @@ +<macros> + <token name="@THREADS@">\${GALAXY_SLOTS:-4}</token> + <token name="@WRAPPER_VERSION@">2.0</token> + <xml name="requirements"> + <requirements> + <requirement type="package" version="@WRAPPER_VERSION@">pygenometracks</requirement> + <yield /> + </requirements> + <version_command>@BINARY@ --version</version_command> + </xml> + + <xml name="citations"> + <citations> + <citation type="doi">10.5281/zenodo.1133705</citation> + <yield /> + </citations> + </xml> + + <xml name="colormap"> + <param argument="--colorMap" name="colormap" type="select" optional="True" label="Color map to use for the heatmap" help=" Available color map names can be found here: https://matplotlib.org/examples/color/colormaps_reference.html"> + <option value="RdYlBu">RdYlBu</option> + <option value="Accent">Accent</option> + <option value="Spectral">Spectral</option> + <option value="Set1">Set1</option> + <option value="Set2">Set2</option> + <option value="Set3">Set3</option> + <option value="Dark2">Dark2</option> + <option value="Reds">Reds</option> + <option value="Oranges">Oranges</option> + <option value="Greens">Greens</option> + <option value="Blues">Blues</option> + <option value="Greys">Greys</option> + <option value="Purples">Purples</option> + <option value="Paired">Paired</option> + <option value="Pastel1">Pastel1</option> + <option value="Pastel2">Pastel2</option> + <option value="spring">spring</option> + <option value="summer">summer</option> + <option value="autumn">autumn</option> + <option value="winter">winter</option> + <option value="hot">hot</option> + <option value="coolwarm">coolwarm</option> + <option value="cool">cool</option> + <option value="seismic">seismic</option> + <option value="terrain">terrain</option> + <option value="ocean">ocean</option> + <option value="rainbow">rainbow</option> + <option value="bone">bone</option> + <option value="flag">flag</option> + <option value="prism">prism</option> + <option value="cubehelix">cubehelix</option> + <option value="binary">binary</option> + <option value="pink">pink</option> + <option value="gray">gray</option> + <option value="copper">copper</option> + <option value="BrBG">BrBG</option> + <option value="BuGn">BuGn</option> + <option value="BuPu">BuPu</option> + <option value="GnBu">GnBu</option> + <option value="OrRd">OrRd</option> + <option value="PiYG">PiYG</option> + <option value="PRGn">PRGn</option> + <option value="PuOr">PuOr</option> + <option value="PuRd">PuRd</option> + <option value="PuBu">PuBu</option> + <option value="RdBu">RdBu</option> + <option value="RdGy">RdGy</option> + <option value="RdPu">RdPu</option> + <option value="YlGn">YlGn</option> + <option value="PuBuGn">PuBuGn</option> + <option value="RdYlGn">RdYlGn</option> + <option value="YlGnBu">YlGnBu</option> + <option value="YlOrBr">YlOrBr</option> + <option value="YlOrRd">YlOrRd</option> + <option value="gist_gray">gist_gray</option> + <option value="gist_stern">gist_stern</option> + <option value="gist_earth">gist_earth</option> + <option value="gist_yarg">gist_yarg</option> + <option value="gist_ncar">gist_ncar</option> + <option value="gist_rainbow">gist_rainbow</option> + <option value="gist_heat">gist_heat</option> + <option value="gnuplot">gnuplot</option> + <option value="gnuplot2">gnuplot2</option> + <option value="CMRmap">CMRmap</option> + <option value="bwr">bwr</option> + <option value="hsv">hsv</option> + <option value="brg">brg</option> + <option value="jet">jet</option> + <option value="afmhot">afmhot</option> + <option value="Accent_r">Accent reversed</option> + <option value="Spectral_r">Spectral reversed</option> + <option value="Set1_r">Set1 reversed</option> + <option value="Set2_r">Set2 reversed</option> + <option value="Set3_r">Set3 reversed</option> + <option value="Dark2_r">Dark2 reversed</option> + <option value="Reds_r">Reds reversed</option> + <option value="Oranges_r">Oranges reversed</option> + <option value="Greens_r">Greens reversed</option> + <option value="Blues_r">Blues reversed</option> + <option value="Greys_r">Greys reversed</option> + <option value="Purples_r">Purples reversed</option> + <option value="Paired_r">Paired reversed</option> + <option value="Pastel1_r">Pastel1 reversed</option> + <option value="Pastel2_r">Pastel2 reversed</option> + <option value="spring_r">spring reversed</option> + <option value="summer_r">summer reversed</option> + <option value="autumn_r">autumn reversed</option> + <option value="winter_r">winter reversed</option> + <option value="hot_r">hot reversed</option> + <option value="coolwarm_r">coolwarm reversed</option> + <option value="cool_r">cool reversed</option> + <option value="seismic_r">seismic reversed</option> + <option value="terrain_r">terrain reversed</option> + <option value="ocean_r">ocean reversed</option> + <option value="rainbow_r">rainbow reversed</option> + <option value="bone_r">bone reversed</option> + <option value="flag_r">flag reversed</option> + <option value="prism_r">prism reversed</option> + <option value="cubehelix_r">cubehelix reversed</option> + <option value="binary_r">binary reversed</option> + <option value="pink_r">pink reversed</option> + <option value="gray_r">gray reversed</option> + <option value="copper_r">copper reversed</option> + <option value="BrBG_r">BrBG reversed</option> + <option value="BuGn_r">BuGn reversed</option> + <option value="BuPu_r">BuPu reversed</option> + <option value="GnBu_r">GnBu reversed</option> + <option value="OrRd_r">OrRd reversed</option> + <option value="PiYG_r">PiYG reversed</option> + <option value="PRGn_r">PRGn reversed</option> + <option value="PuOr_r">PuOr reversed</option> + <option value="PuRd_r">PuRd reversed</option> + <option value="PuBu_r">PuBu reversed</option> + <option value="RdBu_r">RdBu reversed</option> + <option value="RdGy_r">RdGy reversed</option> + <option value="RdPu_r">RdPu reversed</option> + <option value="YlGn_r">YlGn reversed</option> + <option value="PuBuGn_r">PuBuGn reversed</option> + <option value="RdYlBu_r" selected="True">RdYlBu reversed</option> + <option value="RdYlGn_r">RdYlGn reversed</option> + <option value="YlGnBu_r">YlGnBu reversed</option> + <option value="YlOrBr_r">YlOrBr reversed</option> + <option value="YlOrRd_r">YlOrRd reversed</option> + <option value="gist_gray_r">gist_gray reversed</option> + <option value="gist_stern_r">gist_stern reversed</option> + <option value="gist_earth_r">gist_earth reversed</option> + <option value="gist_yarg_r">gist_yarg reversed</option> + <option value="gist_ncar_r">gist_ncar reversed</option> + <option value="gist_rainbow_r">gist_rainbow reversed</option> + <option value="gist_heat_r">gist_heat reversed</option> + <option value="gnuplot_r">gnuplot reversed</option> + <option value="gnuplot2_r">gnuplot2 reversed</option> + <option value="CMRmap_r">CMRmap reversed</option> + <option value="bwr_r">bwr reversed</option> + <option value="hsv_r">hsv reversed</option> + <option value="brg_r">brg reversed</option> + <option value="jet_r">jet reversed</option> + <option value="afmhot_r">afmhot reversed</option> + </param> + </xml> + + <xml name="region"> + <param argument="--region" type="text" label="Region of the genome to limit the operation" + help="The format is chr:start-end. Also valid is just to specify a chromosome, for example chr10:10-500" /> + </xml> + + <xml name='matrix_h5_cooler_multiple_macro'> + <param name='matrix_h5_cooler_multiple' type="data" format="h5,cool" + label="Matricies to compute on" multiple="true"/> + </xml> + <token name="@REFERENCES@"> + +.. class:: infomark + +For more information on the tools, please visit our `help site`_. + +If you would like to give us feedback or you run into any trouble, please send an email to deeptools@googlegroups.com + +This tool is developed by the `Bioinformatics and Deep-Sequencing Unit`_ at the `Max Planck Institute for +Immunobiology and Epigenetics`_. + +.. _Bioinformatics and Deep-Sequencing Unit: http://www3.ie-freiburg.mpg.de/facilities/research-facilities/bioinformatics-and-deep-sequencing-unit/ +.. _Max Planck Institute for Immunobiology and Epigenetics: http://www3.ie-freiburg.mpg.de +.. _help site: https://github.com/deeptools/pyGenomeTracks + + </token> + + <xml name="track_input_bed_macro"> + <param name="track_input_bed" type="data" format="bed" label="Track file bed format" multiple='True'/> + </xml> + <xml name="track_input_bed_single_macro"> + <param name="track_input_bed_single" type="data" format="bed" label="Track file bed format"/> + </xml> + <xml name="track_input_bedgraph_macro"> + <param name="track_input_bedgraph" type="data" format="bedgraph" label="Track file bedgraph format" multiple='True'/> + </xml> + <xml name="track_input_bigwig_macro"> + <param name="track_input_bigwig" type="data" format="bigwig" label="Track file bigwig format" multiple='True'/> + </xml> + <xml name="track_input_bedgraph_matrix_macro"> + <param name="track_input_bedgraph_matrix" type="data" format="bedgraph" label="Track file bigwig format" multiple='True'/> + </xml> + <xml name="plot_title"> + <param name="title" type="text" optional="true" label="Plot title" multiple='True'/> + </xml> + <xml name="spacer_macro"> + <param name="spacer_height" type="float" value="" optional="True" + label="Include spacer at the end of the track" help="Height of the spacer." /> + </xml> +</macros>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pyGenomeTracks.xml Sat Jun 23 02:28:35 2018 -0400 @@ -0,0 +1,768 @@ +<tool id="pygenomeTracks" name="@BINARY@" version="@WRAPPER_VERSION@.0"> + <description>plot genomic data tracks</description> + <macros> + <token name="@BINARY@">pyGenomeTracks</token> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command detect_errors="exit_code"> +<![CDATA[ + + sed '/^$/d' '$tracks_config' && + @BINARY@ + --tracks '$tracks_config' + #if $region and $region is not None: + --region '$region' + #end if + --outFileName plot.$image_file_format + && mv plot.$image_file_format plot +]]> + </command> + <configfiles> + <configfile name="tracks_config"> +#if $x_axis.x_axis_select == "yes": +[x-axis] +#if $x_axis.fontsize: +fontsize = $x_axis.fontsize +#end if +#if $x_axis.where: +where = $x_axis.where +#end if +#end if +#for $counter, $track in enumerate($tracks): +#if $track.track_file_style_conditional.track_file_style_selector == "hic_matrix_option": + +#for $counter_matrix, $data_matrix in enumerate($track.track_file_style_conditional.matrix_h5_cooler_multiple): +[hic_section_$counter] +file = $data_matrix +file_type = hic_matrix +#if $track.track_file_style_conditional.title: +title = $track.track_file_style_conditional.title +#else: +title = $data_matrix.name +#end if +#if $track.track_file_style_conditional.depth: +depth = $track.track_file_style_conditional.depth +#end if +#if $track.track_file_style_conditional.colormap: +colormap = $track.track_file_style_conditional.colormap +#end if +#if $track.track_file_style_conditional.min_value: +min_value = $track.track_file_style_conditional.min_value +#end if +#if $track.track_file_style_conditional.max_value: +max_value = $track.track_file_style_conditional.max_value +#end if +transform = $track.track_file_style_conditional.transform +height = $track.track_file_style_conditional.height_matrix + +#if $track.track_file_style_conditional.boundaries_file is not None: +#set boundary_file = $track.track_file_style_conditional.boundaries_file[$counter_matrix] +boundaries_file = $boundary_file +#end if + +#if $track.track_file_style_conditional.x_labels: +x labels = $track.track_file_style_conditional.x_labels +#end if +#if $track.track_file_style_conditional.type: +type = $track.track_file_style_conditional.type +#end if +#if $track.track_file_style_conditional.show_masked_bins: +show_masked_bins = $track.track_file_style_conditional.show_masked_bins +#end if +#if $track.track_file_style_conditional.scale_factor: +scale factor = $track.track_file_style_conditional.scale_factor +#end if + +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end for + +#end if + + + +#if $track.track_file_style_conditional.track_file_style_selector == "tad_score_track_option": + +#for $data_bedgraph in $track.track_file_style_conditional.track_input_bedgraph: +[tad_score_$counter] +file = $data_bedgraph +#if $track.track_file_style_conditional.title: +title = $track.track_file_style_conditional.title +#else: +title = $data_bedgraph.name +#end if +#if $track.track_file_style_conditional.color: +color = $track.track_file_style_conditional.color +#end if +#if $track.track_file_style_conditional.height_tad: +height = $track.track_file_style_conditional.height_tad +#end if +#if $track.track_file_style_conditional.type_lines: +type = $track.track_file_style_conditional.type_lines +#end if +#if $track.track_file_style_conditional.show_data: +show data range = $track.track_file_style_conditional.show_data +#end if + +#set $columns = len(open(str($track.track_file_style_conditional.track_input_bedgraph)).readline().split('\t')) +#if $columns > 5: +file_type = bedgraph_matrix +#else: +file_type = bedgraph +#end if +type = lines +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end for +#end if + + + + +#if $track.track_file_style_conditional.track_file_style_selector == "chrom_states_option": +#for $data_bed in $track.track_file_style_conditional.track_input_bed: + +[chrom states_$counter] +file = $data_bed +#if $track.track_file_style_conditional.title: +title = $track.track_file_style_conditional.title +#else: +title = $data_bed.name +#end if +#if $track.track_file_style_conditional.color: +color = $track.track_file_style_conditional.color +#end if +display = collapsed +#if $track.track_file_style_conditional.height_chrom: +height = $track.track_file_style_conditional.height_chrom +#end if +#if $track.track_file_style_conditional.border_color: +border_color = $track.track_file_style_conditional.border_color +#end if +file_type = bed +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end for + +#end if + + + + +#if $track.track_file_style_conditional.track_file_style_selector == "gene_track_option": +#for $data_bed in $track.track_file_style_conditional.track_input_bed: + +[genes_$counter] +file = $data_bed +#if $track.track_file_style_conditional.title: +title = $track.track_file_style_conditional.title +#else: +title = $data_bed.name +#end if +#if $track.track_file_style_conditional.color: +color = $track.track_file_style_conditional.color +#end if + +#if $track.track_file_style_conditional.height_bed: +height = $track.track_file_style_conditional.height_bed +#end if + +#if $track.track_file_style_conditional.labels: +labels = $track.track_file_style_conditional.labels +#end if + +#if $track.track_file_style_conditional.type: +type = $track.track_file_style_conditional.type +#end if + +file_type = bed +#if $track.track_file_style_conditional.fontsize: +fontsize = $track.track_file_style_conditional.fontsize +#end if + +#if $track.track_file_style_conditional.gene_rows: +gene rows = $track.track_file_style_conditional.gene_rows +#end if + +#if $track.track_file_style_conditional.global_max_row: +global max row = $track.track_file_style_conditional.global_max_row +#end if +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end for +#end if + + +#if $track.track_file_style_conditional.track_file_style_selector == "bedgraph_track_option": +#for $data_bedgraph in $track.track_file_style_conditional.track_input_bedgraph: + +[bedgraph_$counter] +file = $data_bedgraph +#if $track.track_file_style_conditional.title: +title = $track.track_file_style_conditional.title +#else: +title = $data_bedgraph.name +#end if +#if $track.track_file_style_conditional.color: +color = $track.track_file_style_conditional.color +#end if +#if $track.track_file_style_conditional.height_bedgraph: +height = $track.track_file_style_conditional.height_bedgraph +#end if +#if $track.track_file_style_conditional.show_data: +show data range = $track.track_file_style_conditional.show_data +#end if + +#set $columns = len(open(str($track.track_file_style_conditional.track_input_bedgraph)).readline().split('\t')) +#if $columns > 5: +file_type = bedgraph_matrix +#else: +file_type = bedgraph +#end if +type = lines +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end for +#end if + +#if $track.track_file_style_conditional.track_file_style_selector == "bigwig_track_option": +#for $data_bigwig in $track.track_file_style_conditional.track_input_bigwig: +[bigwig_$counter] +file = $data_bigwig +#if $track.track_file_style_conditional.title: +title = $track.track_file_style_conditional.title +#else: +title = $data_bigwig.name +#end if +color = $track.track_file_style_conditional.color +#if $track.track_file_style_conditional.min_value: +min_value = $track.track_file_style_conditional.min_value +#else: +min_value = 0 +#end if +#if $track.track_file_style_conditional.max_value: +max_value = $track.track_file_style_conditional.max_value +#else: +max_value = auto +#end if +height = $track.track_file_style_conditional.height_bigwig +#if $track.track_file_style_conditional.number_of_bins: +number of bins = $track.track_file_style_conditional.number_of_bins +#end if +nans to zeros = $track.track_file_style_conditional.nans_to_zeros +#if $track.track_file_style_conditional.type_conditional == 'fill_option': +type = fill +#elif $track.track_file_style_conditional.type_conditional == 'line_option': +type = line:$track.track_file_style_conditional.type_conditional.height_line +#elif $track.track_file_style_conditional.type_conditional == 'point_option': +type = points:$track.track_file_style_conditional.type_conditional.width_point +#end if +#if $track.track_file_style_conditional.data_range: +show data range = $track.track_file_style_conditional.data_range +#end if +file_type = bigwig +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end for +#end if + + +#if $track.track_file_style_conditional.track_file_style_selector == "bedgraph_matrix_track_option": +#for $data_bedgraph_matrix in $track.track_file_style_conditional.track_input_bedgraph_matrix: + +[bedgraph_matrix_$counter] +file = $data_bedgraph_matrix +#if $track.track_file_style_conditional.title: +title = $track.track_file_style_conditional.title +#else: +title = $data_bedgraph_matrix.name +#end if +#if $track.track_file_style_conditional.height_bedgraph: +height = $track.track_file_style_conditional.height_bedgraph +#end if +orientation = inverted +#if $track.track_file_style_conditional.min_value: +min_value = $track.track_file_style_conditional.min_value +#end if +#if $track.track_file_style_conditional.max_value: +max_value = $track.track_file_style_conditional.max_value +#end if +#if $track.track_file_style_conditional.type_lines: +type = $track.track_file_style_conditional.type_lines +#end if +file_type = bedgraph_matrix +plot horizontal lines=False +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end for +#end if + +#if $track.track_file_style_conditional.track_file_style_selector == "vlines_track_option": + +[vlines_$counter] +file = $track.track_file_style_conditional.track_input_bed_single +type = vlines +file_type = bed +#end if +#if $track.track_file_style_conditional.track_file_style_selector == "spacer_option": + +[spacer] +#if $track.track_file_style_conditional.spacer_height: +height = $track.track_file_style_conditional.spacer_height +#end if +#end if +#end for</configfile> + </configfiles> + <inputs> + <expand macro="region" /> + + <repeat name="tracks" min="1" title="Include tracks in your plot" + help="Tracks can be of different filetypes. E.g BED, HiC-Matrix, BigWig or BedGraph"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" type="select" label="Choose style of the track"> + <option value="hic_matrix_option">TAD visualization</option> + <option value="chrom_states_option">Chromatine states</option> + <option value="tad_score_track_option">TAD score</option> + <option value="gene_track_option">Gene track / Bed track</option> + <option value="bigwig_track_option">Bigwig track</option> + <option value="bedgraph_track_option">Bedgraph track </option> + <option value="bedgraph_matrix_track_option">Bedgraph matrix track</option> + <option value="vlines_track_option">Vlines track</option> + <option value="spacer_option">Spacer</option> + </param> + <when value="hic_matrix_option"> + <expand macro="plot_title" /> + <expand macro="matrix_h5_cooler_multiple_macro" /> + + <expand macro="colormap" /> + <param name="depth" type="integer" value="8000000" optional="True" label="Depth" /> + <param name="min_value" type="float" value="" optional="True" label="Minimum value"/> + <param name="max_value" type="float" value="" optional="True" label="Maximum value"/> + <param name="transform" type="select" label="Plot the transformed value"> + <option value="log1p" selected="True" >log1p</option> + <option value="log">log</option> + <option value="-log">-log</option> + + </param> + <param name="height_matrix" type="float" value="1.5" optional="True" label="height"/> + + <param name="type" type="select" optional="True" label="Plotting type"> + <option value="arcplot">arcplot</option> + <option value="interaction">interaction</option> + </param> + <param name="show_masked_bins" type="boolean" truevalue="yes" falsevalue="no" checked="false" + label="Show masked bins" /> + <param name="boundaries_file" type="data" optional="True" format="bed" label="Boundaries file" multiple='True'/> <!-- multiple='True'--> + <param name="scale_factor" type="float" value="1.0" optional="True" label="Scale factor" help="if the values in the matrix need to be scaled the following parameter can be used" /> + <param name="x_labels" type="boolean" truevalue="yes" falsevalue="no" optional="True" label="Show x labels" /> + <expand macro="spacer_macro" /> + + </when> + <when value="tad_score_track_option"> + <expand macro="plot_title" /> + <expand macro="track_input_bedgraph_macro" /> + <param name="color" type="color" value="#000000" label="Color of track" optional="True" /> + <param name="type_lines" type="boolean" truevalue="lines" falsevalue="" checked="false" + label="Set 'type' to 'lines'" help="if type is set as lines, then the TAD score lines are drawn instead + of the matrix set to lines if a heatmap representing the matrix is not wanted"/> + <param name="height_tad" type="float" value="0.2" optional="True" label="height"/> + <param name='show_data' type="boolean" truevalue="yes" falsevalue="no" checked="false" optional="True" label="Show visualization of data range" /> + <expand macro="spacer_macro" /> + + </when> + <when value="chrom_states_option"> + <expand macro="plot_title" /> + + <expand macro="track_input_bed_macro" /> + <param name="color" type="color" value="#000000" label="Color of track" optional="True" /> + + <param name="border_color" type="color" value="#000000" label="Border color" optional="True" /> + <param name="height_chrom" type="float" value="1.5" optional="True" label="height"/> + <param name="labels" type="boolean" truevalue="on" falsevalue="off" checked="true" + label="Plot labels" /> + <expand macro="spacer_macro" /> + + </when> + <when value="gene_track_option"> + <expand macro="plot_title" /> + + <expand macro="track_input_bed_macro" /> + <param name="color" type="color" value="#000000" label="Color of track" optional="True" /> + <param name="height_bed" type="float" value="1.5" optional="True" label="height"/> + <param name="labels" type="boolean" truevalue="on" falsevalue="off" checked="true" + label="Plot labels" /> + <param name="type" type="select" optional="True" label="Type"> + <option value="genes">genes</option> + <option value="domains">domains</option> + </param> + <param name="global_max_row" type="boolean" truevalue="yes" falsevalue="no" checked="false" + label="Global max rows" /> + <param name="gene_rows" type="integer" value="" optional="True" label="Gene rows" /> + <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> + <expand macro="spacer_macro" /> + + </when> + <when value="bedgraph_track_option"> + <expand macro="plot_title" /> + <expand macro="track_input_bedgraph_macro" /> + <param name="color" type="color" value="#000000" label="Color of track" optional="True" /> + + <param name="height_bedgraph" type="float" value="0.2" optional="True" label="height"/> + <param name='show_data' type="boolean" truevalue="yes" falsevalue="no" checked="false" optional="True" label="Show visualization of data range" /> + <expand macro="spacer_macro" /> + + </when> + <when value="bigwig_track_option"> + <expand macro="plot_title" /> + + <expand macro="track_input_bigwig_macro" /> + <param name="color" type="color" value="#000000" label="Color of track" optional="True" /> + + <param name="min_value" type="float" value="" optional="True" label="Minimum value"/> + <param name="max_value" type="float" value="" optional="True" label="Maximum value"/> + + <param name="height_bigwig" type="float" value="1.5" optional="True" label="height"/> + <param name="number_of_bins" type="integer" value="" optional="True" label="Number of bins" /> + <param name="nans_to_zeros" type="boolean" truevalue="True" falsevalue="False" checked="false" + label="NAN's to zeros" /> + <conditional name="type_conditional"> + <param name="type_selector" type="select" label="Choose style of the plot."> + <option value="fill_option">fill</option> + <option value="line_option">line</option> + <option value="point_option">point</option> + </param> + <when value="line_option"> + <param name="width_line" type="float" value="0.5" optional="True" label="Width"/> + </when> + <when value="point_option"> + <param name="width_point" type="float" value="0.5" optional="True" label="Width"/> + </when> + <when value="fill_option" /> + </conditional> + <param name="data_range" type="boolean" truevalue="yes" falsevalue="no" optional="True" checked="false" /> + <expand macro="spacer_macro" /> + + </when> + + + <when value="bedgraph_matrix_track_option"> + <expand macro="plot_title" /> + + <expand macro="track_input_bedgraph_matrix_macro" /> + <param name="min_value" type="float" value="" optional="True" label="Minimum value"/> + <param name="max_value" type="float" value="" optional="True" label="Maximum value"/> + + <param name="height_bedgraph" type="float" value="1.5" optional="True" label="height"/> + + <param name="type_lines" type="boolean" truevalue="lines" falsevalue="" checked="false" + label="Set 'type' to 'lines'" help="if type is set as lines, then the TAD score lines are drawn instead + of the matrix set to lines if a heatmap representing the matrix is not wanted"/> + <expand macro="spacer_macro" /> + + </when> + <when value="vlines_track_option"> + <expand macro="track_input_bed_single_macro" /> + </when> + <when value="spacer_option"> + <expand macro="spacer_macro" /> + </when> + </conditional> + + </repeat> + + + <conditional name="x_axis"> + <param name="x_axis_select" type="select" label="Configure x-axis"> + <option value="no" selected="True">No</option> + <option value="yes">Yes</option> + </param> + <when value="yes"> + <param name="fontsize" type="integer" value="" optional="True" label="Fontsize" /> + <param name="where" type="select" optional="True" label="Where to place the x-axis"> + <option value="top">Top</option> + <option value="bottom">Bottom</option> + </param> + </when> + <when value="no" /> + </conditional> + <param name="image_file_format" type="select" label="Image output format"> + <option value="png">png</option> + <option value="svg">svg</option> + </param> + </inputs> + <outputs> + <data format="png" name="outFileName" from_work_dir="plot" label="${tool.name} on [${on_string}]: Plot"> + <change_format> + <when input="image_file_format" value="png" format="png" /> + <when input="image_file_format" value="svg" format="svg" /> + </change_format> + </data> + </outputs> + <tests> + <test> + <param name="region" value="chrX:3000000-3500000"/> + <conditional name="x_axis"> + <param name="x_axis_select" value="yes" /> + </conditional> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="hic_matrix_option" /> + <param name="matrix_h5_cooler_multiple" value="Li_et_al_2015.h5"/> + + <param name="title" value="Kc DpnII (Li et al. 2015)" /> + <param name="colormap" value="RdYlBu_r" /> + <param name="depth" value="200000" /> + <param name="transform" value="log1p" /> + <param name="boundaries_file" value="domains.bed" /> + <param name="x_labels" value="True" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="spacer_option" /> + <param name="spacer_height" value="0.05" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="chrom_states_option" /> + <param name="track_input_bed" value="tad_classification.bed" ftype="bed" /> + <param name="title" value="TAD state" /> + <param name="height_chrom" value="0.5" /> + <param name="labels" value="off" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="tad_score_track_option" /> + <param name="track_input_bedgraph" value="tad_score.gz" ftype="bedgraph" /> + <param name="title" value="TAD separation score (Ramirez et al.)" /> + <param name="height_tad" value="10" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="spacer_option" /> + <param name="spacer_height" value="1" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="bedgraph_track_option" /> + <param name="track_input_bedgraph" value="bedgraph_chrx_2e6_5e6.bg" ftype="bedgraph" /> + <param name="title" value="bedgraph" /> + <param name="height_bedgraph" value="4" /> + <param name="color" value="blue" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="bigwig_track_option" /> + <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw" ftype="bigwig" /> + <param name="title" value="rep 1 test fill" /> + <param name="height_bigwig" value="4" /> + <param name="color" value="blue" /> + <conditional name="type_conditional"> + <param name="type_selector" value="fill_option" /> + </conditional> + </conditional> + </repeat> + + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="bigwig_track_option" /> + <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw" ftype="bigwig" /> + <param name="title" value="rep 1 test line" /> + <param name="height_bigwig" value="4" /> + <param name="color" value="red" /> + <conditional name="type_conditional"> + <param name="type_selector" value="line_option" /> + <param name="width_line" value="1" /> + </conditional> + </conditional> + </repeat> + + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="bigwig_track_option" /> + <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw" ftype="bigwig" /> + <param name="title" value="rep 1 test lw=0.2" /> + <param name="height_bigwig" value="4" /> + <param name="color" value="red" /> + <conditional name="type_conditional"> + <param name="type_selector" value="line_option" /> + <param name="width_line" value="0.1" /> + + </conditional> + </conditional> + </repeat> + + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="bigwig_track_option" /> + <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw" ftype="bigwig" /> + <param name="title" value="rep 1 test point:0.5" /> + <param name="height_bigwig" value="4" /> + <param name="color" value="black" /> + <conditional name="type_conditional"> + <param name="type_selector" value="point_option" /> + <param name="width_point" value="0.5" /> + + </conditional> + </conditional> + </repeat> + + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="spacer_option" /> + <param name="spacer_height" value="0.5" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="gene_track_option" /> + <param name="track_input_bed" value="dm3_genes.bed.gz" ftype="bed" /> + <param name="title" value="genes" /> + <param name="height_bed" value="5" /> + <param name="fontsize" value="10" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="spacer_option" /> + <param name="spacer_height" value="1" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="gene_track_option" /> + <param name="track_input_bed" value="dm3_genes.bed.gz" ftype="bed" /> + <param name="title" value="max num rows 3" /> + <param name="height_bed" value="3" /> + <param name="fontsize" value="8" /> + <param name="gene_rows" value="3" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="spacer_option" /> + <param name="spacer_height" value="1" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="gene_track_option" /> + <param name="track_input_bed" value="dm3_genes.bed6.gz" ftype="bed" /> + <param name="title" value="bed6 global max row" /> + <param name="height_bed" value="20" /> + <param name="fontsize" value="10" /> + <param name="global_max_row" value="True" /> + </conditional> + </repeat> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="vlines_track_option" /> + <param name="track_input_bed_single" value="domains.bed" ftype="bed" /> + <param name="type" value="vlines" /> + </conditional> + </repeat> + <param name="image_file_format" value="png" /> + <output name="outFileName" file="master_TADs_plot.png" ftype="png" compare="sim_size" delta="35000" /> + </test> + <test> + <param name="region" value="chrX:3000000-3500000"/> + <conditional name="x_axis"> + <param name="x_axis_select" value="yes" /> + </conditional> + <repeat name="tracks"> + <conditional name="track_file_style_conditional"> + <param name="track_file_style_selector" value="bigwig_track_option" /> + <param name="track_input_bigwig" value="bigwig_chrx_2e6_5e6.bw,bigwig_chrx_2e6_5e6.bw" ftype="bigwig" /> + <param name="title" value="rep 1 test line" /> + <param name="height_bigwig" value="4" /> + <param name="color" value="red" /> + <conditional name="type_conditional"> + <param name="type_selector" value="line_option" /> + <param name="width_line" value="1" /> + </conditional> + </conditional> + </repeat> + <param name="image_file_format" value="png" /> + <output name="outFileName" file="bigwig_multiple.png" ftype="png" compare="sim_size" delta="35000" /> + </test> + </tests> + <help><![CDATA[ + +pyGenomeTracks +============== + +**pyGenomeTracks** is a visualization tool which aims to produce high-quality genome browser tracks that are highly customizable. + Currently, it is possible to plot: + + - bigwig + - bed (many options) + - bedgraph + - links (represented as arcs) + - Hi-C matrices + +_________________ + +Usage +----- + +This tool takes various types of tracks as input: + + - **Chromatin states:** display blocks of different colors following a bed file. + - **Gene track / Bed Track:** display genes or bed files. Labels like gene names can be toggled on or off. + - **Bigwig track:** generic bigwig track plotting. + - **Bedgraph track:** generic bedgraph track plotting. + - **Bedgraph matrix track** is used to specifically plot bm files computed by HiCExplorer's ``hicFindTADs`` (TAD seperation scores). + - **Vlines:** vertical lines drawn on top of all tracks following a bed file. It is used as a visual support where regions start / end over all tracks, for example to display TAD boundaries computed by HiCExplorer's ``hicFindTADs``. + - **Spacer:** Add some space between two tracks. + - **Hi-C tracks:** + - **TAD vizualisation:** corrected Hi-C contact matrix to plot a contact heatmap. It is recommended to follow HiCExplorer's ``hicPlotMatrix`` instructions. Boundaries file can used, which is the output of HiCExplorer's ``hicFindTADs`` in bed format. If selected, TADs will be drawn directly on the contact heatmap. + - **TAD score:** display TAD seperation score computed by HiCExplorer's ``hicFindTADs``. + + +For each track, parameters for the color, the width or the font size can be defined. + +_________________ + +Output +------ + +**pyGenomeTracks** output is similar to a genome browser screen-shot that besides the usual genes, and score data (like bigwig or bedgraph files) +also contains Hi-C data. The plot is composed of tracks that need to be specified. +Below is represented the 85 Mb to 110 Mb region from human chromosome 2 visualized using **pyGenomeTracks**. +TADs were computed by HiCExplorer's ``hicFindTADs``. The additional tracks added correspond to: +TAD-separation score (as reported by HiCExplorer's ``hicFindTADs``), chromatin states, +principal component 1 (A/B compartment) computed using HiCExplorer's ``hicPCA``, ChIP-seq coverage for the H3K27ac mark, DNA methylation, and a gene track. +Data are from mouse cardiac myocytes, published by `Nothjunge et al. (2017)`_. + +.. image:: $PATH_TO_IMAGES/pyGenomeTracks.png + :width: 70 % + +_________________ + +| For more information about pyGenomeTracks please consider our documentation on github_ + +.. _github: https://github.com/deeptools/pyGenomeTracks +.. _`Nothjunge et al. (2017)`: https://www.nature.com/articles/s41467-017-01724-9 +]]></help> + <expand macro="citations" /> +</tool>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bedgraph_chrx_2e6_5e6.bg Sat Jun 23 02:28:35 2018 -0400 @@ -0,0 +1,11308 @@ +chrX 2000700 2000750 1 +chrX 2000750 2000800 2 +chrX 2000800 2001000 0 +chrX 2001000 2001100 1 +chrX 2001100 2001650 0 +chrX 2001650 2001700 1 +chrX 2001700 2001750 2 +chrX 2001750 2001800 1 +chrX 2001800 2003300 0 +chrX 2003300 2003350 5 +chrX 2003350 2003400 6 +chrX 2003400 2003450 1 +chrX 2003450 2003500 0 +chrX 2003500 2003600 8 +chrX 2003600 2003650 2 +chrX 2003650 2003750 0 +chrX 2003750 2003800 5 +chrX 2003800 2003850 9 +chrX 2003850 2003900 8 +chrX 2003900 2003950 10 +chrX 2003950 2004000 8 +chrX 2004000 2004050 7 +chrX 2004050 2004100 5 +chrX 2004100 2004150 6 +chrX 2004150 2004200 7 +chrX 2004200 2004250 3 +chrX 2004250 2004300 4 +chrX 2004300 2004400 8 +chrX 2004400 2004450 4 +chrX 2004450 2004500 2 +chrX 2004500 2004550 3 +chrX 2004550 2004600 4 +chrX 2004600 2004650 5 +chrX 2004650 2004700 4 +chrX 2004700 2004750 0 +chrX 2004750 2004800 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16862432 ID_2537 0.111499125 . 16834800 16862432 31,120,180 +X 16862432 16961407 ID_2538 0.114010125 . 16862432 16961407 51,160,44 +X 16961407 16971838 ID_2539 0.201090125 . 16961407 16971838 31,120,180 +X 16971838 17001183 ID_2540 0.168328625 . 16971838 17001183 51,160,44 +X 17001183 17018548 ID_2541 0.10828125 . 17001183 17018548 31,120,180 +X 17018548 17041849 ID_2542 0.103406 . 17018548 17041849 51,160,44 +X 17041849 17054024 ID_2543 0.13979875 . 17041849 17054024 31,120,180 +X 17054024 17069956 ID_2544 0.12367725 . 17054024 17069956 51,160,44 +X 17069956 17142571 ID_2545 0.16196 . 17069956 17142571 31,120,180 +X 17142571 17179423 ID_2546 0.17391 . 17142571 17179423 51,160,44 +X 17179423 17201328 ID_2547 0.190848125 . 17179423 17201328 31,120,180 +X 17201328 17252627 ID_2548 0.14446775 . 17201328 17252627 51,160,44 +X 17252627 17317605 ID_2549 0.302203 . 17252627 17317605 31,120,180 +X 17317605 17473963 ID_2550 0.20111125 . 17317605 17473963 51,160,44 +X 17473963 17521501 ID_2551 0.21083075 . 17473963 17521501 31,120,180 +X 17521501 17546746 ID_2552 0.141395625 . 17521501 17546746 51,160,44 +X 17546746 17552393 ID_2553 0.167607125 . 17546746 17552393 31,120,180 +X 17552393 17589966 ID_2554 0.135046125 . 17552393 17589966 51,160,44 +X 17589966 17604054 ID_2555 0.123033375 . 17589966 17604054 31,120,180 +X 17604054 17631974 ID_2556 0.113843 . 17604054 17631974 51,160,44 +X 17631974 17645756 ID_2557 0.1441955 . 17631974 17645756 31,120,180 +X 17645756 17714877 ID_2558 0.14988875 . 17645756 17714877 51,160,44 +X 17714877 17736083 ID_2559 0.118003625 . 17714877 17736083 31,120,180 +X 17736083 17750625 ID_2560 0.162758875 . 17736083 17750625 51,160,44 +X 17750625 17791579 ID_2561 0.15534 . 17750625 17791579 31,120,180 +X 17791579 17979152 ID_2562 0.0442455 . 17791579 17979152 51,160,44 +X 17979152 17995901 ID_2563 0.13299675 . 17979152 17995901 31,120,180 +X 17995901 18031773 ID_2564 0.183931 . 17995901 18031773 51,160,44 +X 18031773 18133482 ID_2565 0.189369625 . 18031773 18133482 31,120,180 +X 18133482 18216195 ID_2566 0.138965375 . 18133482 18216195 51,160,44 +X 18216195 18261355 ID_2567 0.175855875 . 18216195 18261355 31,120,180 +X 18261355 18279664 ID_2568 0.07431325 . 18261355 18279664 51,160,44 +X 18279664 18304098 ID_2569 0.165904125 . 18279664 18304098 31,120,180 +X 18304098 18373660 ID_2570 0.158951125 . 18304098 18373660 51,160,44 +X 18373660 18399470 ID_2571 0.213312375 . 18373660 18399470 31,120,180 +X 18399470 18410623 ID_2572 0.171345625 . 18399470 18410623 51,160,44 +X 18410623 18460204 ID_2573 0.13087125 . 18410623 18460204 31,120,180 +X 18460204 18529931 ID_2574 0.242002625 . 18460204 18529931 51,160,44 +X 18529931 18547234 ID_2575 0.1055765 . 18529931 18547234 31,120,180 +X 18547234 18551830 ID_2576 0.114541625 . 18547234 18551830 51,160,44 +X 18551830 18598266 ID_2577 0.12098925 . 18551830 18598266 31,120,180 +X 18598266 18668294 ID_2578 0.28160575 . 18598266 18668294 51,160,44 +X 18668294 18676509 ID_2579 0.15827675 . 18668294 18676509 31,120,180 +X 18676509 18724408 ID_2580 0.1510025 . 18676509 18724408 51,160,44 +X 18724408 18736833 ID_2581 0.1445245 . 18724408 18736833 31,120,180 +X 18736833 18752314 ID_2582 0.10605225 . 18736833 18752314 51,160,44 +X 18752314 18758601 ID_2583 0.200204375 . 18752314 18758601 31,120,180 +X 18758601 18787962 ID_2584 0.171722125 . 18758601 18787962 51,160,44 +X 18787962 18922757 ID_2585 0.163016 . 18787962 18922757 31,120,180 +X 18922757 19050592 ID_2586 0.30101925 . 18922757 19050592 51,160,44 +X 19050592 19074039 ID_2587 0.12360825 . 19050592 19074039 31,120,180 +X 19074039 19081263 ID_2588 0.169394875 . 19074039 19081263 51,160,44 +X 19081263 19102387 ID_2589 0.158137375 . 19081263 19102387 31,120,180 +X 19102387 19137042 ID_2590 0.1480555 . 19102387 19137042 51,160,44 +X 19137042 19163116 ID_2591 0.167718375 . 19137042 19163116 31,120,180 +X 19163116 19171063 ID_2592 0.140546 . 19163116 19171063 51,160,44 +X 19171063 19201498 ID_2593 0.122266625 . 19171063 19201498 31,120,180 +X 19201498 19220554 ID_2594 0.164784875 . 19201498 19220554 51,160,44 +X 19220554 19242911 ID_2595 0.123391125 . 19220554 19242911 31,120,180 +X 19242911 19366620 ID_2596 0.225741 . 19242911 19366620 51,160,44 +X 19366620 19374360 ID_2597 0.15715 . 19366620 19374360 31,120,180 +X 19374360 19389270 ID_2598 0.1604285 . 19374360 19389270 51,160,44 +X 19389270 19399952 ID_2599 0.169796 . 19389270 19399952 31,120,180 +X 19399952 19416481 ID_2600 0.21749325 . 19399952 19416481 51,160,44 +X 19416481 19456185 ID_2601 0.185489875 . 19416481 19456185 31,120,180 +X 19456185 19473065 ID_2602 0.188489875 . 19456185 19473065 51,160,44 +X 19473065 19491987 ID_2603 0.152931125 . 19473065 19491987 31,120,180 +X 19491987 19507538 ID_2604 0.12015975 . 19491987 19507538 51,160,44 +X 19507538 19531934 ID_2605 0.159455125 . 19507538 19531934 31,120,180 +X 19531934 19557899 ID_2606 0.1147575 . 19531934 19557899 51,160,44 +X 19557899 19577569 ID_2607 0.14880575 . 19557899 19577569 31,120,180 +X 19577569 19607671 ID_2608 0.170184125 . 19577569 19607671 51,160,44 +X 19607671 19625150 ID_2609 0.12170925 . 19607671 19625150 31,120,180 +X 19625150 19639107 ID_2610 0.18795025 . 19625150 19639107 51,160,44 +X 19639107 19644907 ID_2611 0.1373115 . 19639107 19644907 31,120,180 +X 19644907 19657054 ID_2612 0.136064375 . 19644907 19657054 51,160,44 +X 19657054 19686912 ID_2613 0.11615975 . 19657054 19686912 31,120,180 +X 19686912 19745861 ID_2614 0.280371875 . 19686912 19745861 51,160,44 +X 19745861 19760530 ID_2615 0.126236875 . 19745861 19760530 31,120,180 +X 19760530 19815382 ID_2616 0.120401125 . 19760530 19815382 51,160,44 +X 19815382 19987457 ID_2617 0.07716825 . 19815382 19987457 31,120,180 +X 19987457 20054086 ID_2618 0.25898975 . 19987457 20054086 51,160,44 +X 20054086 20068910 ID_2619 0.09501175 . 20054086 20068910 31,120,180 +X 20068910 20125761 ID_2620 0.11080175 . 20068910 20125761 51,160,44 +X 20125761 20262048 ID_2621 0.13531825 . 20125761 20262048 31,120,180 +X 20262048 20294608 ID_2622 0.128170125 . 20262048 20294608 51,160,44 +X 20294608 20305771 ID_2623 0.174142 . 20294608 20305771 31,120,180 +X 20305771 20339275 ID_2624 0.132944375 . 20305771 20339275 51,160,44 +X 20339275 20382809 ID_2625 0.171998625 . 20339275 20382809 31,120,180 +X 20382809 20395830 ID_2626 0.167720375 . 20382809 20395830 51,160,44 +X 20395830 20508892 ID_2627 0.099498875 . 20395830 20508892 31,120,180 +X 20508892 20526971 ID_2628 0.207408875 . 20508892 20526971 51,160,44 +X 20526971 20631727 ID_2629 0.234505875 . 20526971 20631727 31,120,180 +X 20631727 20894364 ID_2630 0.1618915 . 20631727 20894364 51,160,44 +X 20894364 20907117 ID_2631 0.115476 . 20894364 20907117 31,120,180 +X 20907117 20916940 ID_2632 0.131365625 . 20907117 20916940 51,160,44 +X 20916940 20931445 ID_2633 0.13657475 . 20916940 20931445 31,120,180 +X 20931445 20944384 ID_2634 0.08793725 . 20931445 20944384 51,160,44 +X 20944384 20996348 ID_2635 0.1540235 . 20944384 20996348 31,120,180 +X 20996348 21012072 ID_2636 0.20320025 . 20996348 21012072 51,160,44 +X 21012072 21178100 ID_2637 0.226353125 . 21012072 21178100 31,120,180 +X 21178100 21186628 ID_2638 0.157524 . 21178100 21186628 51,160,44 +X 21186628 21194946 ID_2639 0.1443005 . 21186628 21194946 31,120,180 +X 21194946 21220857 ID_2640 0.1486745 . 21194946 21220857 51,160,44 +X 21220857 21240098 ID_2641 0.130596 . 21220857 21240098 31,120,180 +X 21240098 21271964 ID_2642 0.097698 . 21240098 21271964 51,160,44 +X 21271964 21343699 ID_2643 0.154854 . 21271964 21343699 31,120,180 +X 21343699 21656357 ID_2644 0.308289 . 21343699 21656357 51,160,44 +X 21656357 21857607 ID_2645 0.011076375 . 21656357 21857607 31,120,180 +X 21857607 21873688 ID_2646 0.156261 . 21857607 21873688 51,160,44 +X 21873688 21889804 ID_2647 0.177314875 . 21873688 21889804 31,120,180 +X 21889804 21907001 ID_2648 0.1288 . 21889804 21907001 51,160,44 +X 21907001 21931844 ID_2649 0.2055825 . 21907001 21931844 31,120,180 +X 21931844 21954371 ID_2650 0.210974875 . 21931844 21954371 51,160,44 +X 21954371 22120033 ID_2651 0.145109 . 21954371 22120033 31,120,180 +X 22120033 22274227 ID_2652 0.293565625 . 22120033 22274227 51,160,44 +X 22274227 22287785 ID_2653 0.224372 . 22274227 22287785 31,120,180 +X 22287785 22349277 ID_2654 0.227037375 . 22287785 22349277 51,160,44 +X 22349277 22380885 ID_2655 0.190254625 . 22349277 22380885 31,120,180 +X 22380885 22421267 ID_2656 0.153354125 . 22380885 22421267 51,160,44
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tad_classification.bed Sat Jun 23 02:28:35 2018 -0400 @@ -0,0 +1,2685 @@ +chr2L 73103 94543 active 2 . 73103 94543 255,255,153 +chr2L 94543 108120 active 4 . 94543 108120 255,255,153 +chr2L 108120 132269 active 2 . 108120 132269 255,255,153 +chr2L 132269 143461 active 2 . 132269 143461 255,255,153 +chr2L 143461 159101 active 2 . 143461 159101 255,255,153 +chr2L 159101 181297 inactive 1 . 159101 181297 0,0,0 +chr2L 181297 207416 active 4 . 181297 207416 255,255,153 +chr2L 207416 248687 active 4 . 207416 248687 255,255,153 +chr2L 248687 271451 inactive 1 . 248687 271451 0,0,0 +chr2L 271451 283072 active 4 . 271451 283072 255,255,153 +chr2L 283072 294919 active 2 . 283072 294919 255,255,153 +chr2L 294919 306028 active 4 . 294919 306028 255,255,153 +chr2L 306028 357775 inactive 1 . 306028 357775 0,0,0 +chr2L 357775 403068 inactive 1 . 357775 403068 0,0,0 +chr2L 403068 421370 active 4 . 403068 421370 255,255,153 +chr2L 421370 472506 active 2 . 421370 472506 255,255,153 +chr2L 472506 490303 active 2 . 472506 490303 255,255,153 +chr2L 490303 541886 active 2 . 490303 541886 255,255,153 +chr2L 541886 553339 active 2 . 541886 553339 255,255,153 +chr2L 553339 559789 active 4 . 553339 559789 255,255,153 +chr2L 559789 574511 active 4 . 559789 574511 255,255,153 +chr2L 574511 602435 PcG 0 . 574511 602435 56,108,176 +chr2L 602435 810330 inactive 1 . 602435 810330 0,0,0 +chr2L 810330 825970 active 4 . 810330 825970 255,255,153 +chr2L 825970 853278 active 2 . 825970 853278 255,255,153 +chr2L 853278 871106 active 2 . 853278 871106 255,255,153 +chr2L 871106 887664 active 2 . 871106 887664 255,255,153 +chr2L 887664 1006986 inactive 1 . 887664 1006986 0,0,0 +chr2L 1006986 1077753 inactive 1 . 1006986 1077753 0,0,0 +chr2L 1077753 1102940 inactive 1 . 1077753 1102940 0,0,0 +chr2L 1102940 1108427 active 4 . 1102940 1108427 255,255,153 +chr2L 1108427 1142854 active 2 . 1108427 1142854 255,255,153 +chr2L 1142854 1157702 active 4 . 1142854 1157702 255,255,153 +chr2L 1157702 1185674 active 4 . 1157702 1185674 255,255,153 +chr2L 1185674 1246112 inactive 1 . 1185674 1246112 0,0,0 +chr2L 1246112 1348267 inactive 1 . 1246112 1348267 0,0,0 +chr2L 1348267 1492300 inactive 1 . 1348267 1492300 0,0,0 +chr2L 1492300 1504156 inactive 1 . 1492300 1504156 0,0,0 +chr2L 1504156 1614536 inactive 1 . 1504156 1614536 0,0,0 +chr2L 1614536 1705229 PcG 0 . 1614536 1705229 56,108,176 +chr2L 1705229 1728747 active 2 . 1705229 1728747 255,255,153 +chr2L 1728747 1818391 inactive 1 . 1728747 1818391 0,0,0 +chr2L 1818391 1884683 inactive 1 . 1818391 1884683 0,0,0 +chr2L 1884683 1909751 inactive 1 . 1884683 1909751 0,0,0 +chr2L 1909751 1937585 active 2 . 1909751 1937585 255,255,153 +chr2L 1937585 1974067 PcG 0 . 1937585 1974067 56,108,176 +chr2L 1974067 1987851 active 4 . 1974067 1987851 255,255,153 +chr2L 1987851 2037530 inactive 1 . 1987851 2037530 0,0,0 +chr2L 2037530 2130843 inactive 1 . 2037530 2130843 0,0,0 +chr2L 2130843 2151583 active 4 . 2130843 2151583 255,255,153 +chr2L 2151583 2193334 active 2 . 2151583 2193334 255,255,153 +chr2L 2193334 2216423 active 2 . 2193334 2216423 255,255,153 +chr2L 2216423 2221910 active 4 . 2216423 2221910 255,255,153 +chr2L 2221910 2237044 active 4 . 2221910 2237044 255,255,153 +chr2L 2237044 2362172 inactive 1 . 2237044 2362172 0,0,0 +chr2L 2362172 2383056 active 4 . 2362172 2383056 255,255,153 +chr2L 2383056 2492696 inactive 1 . 2383056 2492696 0,0,0 +chr2L 2492696 2561589 inactive 1 . 2492696 2561589 0,0,0 +chr2L 2561589 2591551 active 2 . 2561589 2591551 255,255,153 +chr2L 2591551 2724465 inactive 1 . 2591551 2724465 0,0,0 +chr2L 2724465 2740126 active 2 . 2724465 2740126 255,255,153 +chr2L 2740126 2750826 active 4 . 2740126 2750826 255,255,153 +chr2L 2750826 2770137 active 4 . 2750826 2770137 255,255,153 +chr2L 2770137 2809031 active 2 . 2770137 2809031 255,255,153 +chr2L 2809031 2855746 inactive 1 . 2809031 2855746 0,0,0 +chr2L 2855746 2874843 active 2 . 2855746 2874843 255,255,153 +chr2L 2874843 2885455 active 4 . 2874843 2885455 255,255,153 +chr2L 2885455 2969305 active 2 . 2885455 2969305 255,255,153 +chr2L 2969305 2978303 active 4 . 2969305 2978303 255,255,153 +chr2L 2978303 2993262 active 4 . 2978303 2993262 255,255,153 +chr2L 2993262 3023667 active 2 . 2993262 3023667 255,255,153 +chr2L 3023667 3040241 active 4 . 3023667 3040241 255,255,153 +chr2L 3040241 3059220 active 2 . 3040241 3059220 255,255,153 +chr2L 3059220 3109821 active 2 . 3059220 3109821 255,255,153 +chr2L 3109821 3143256 inactive 1 . 3109821 3143256 0,0,0 +chr2L 3143256 3159799 active 2 . 3143256 3159799 255,255,153 +chr2L 3159799 3173450 active 4 . 3159799 3173450 255,255,153 +chr2L 3173450 3303747 inactive 1 . 3173450 3303747 0,0,0 +chr2L 3303747 3356572 active 2 . 3303747 3356572 255,255,153 +chr2L 3356572 3373084 active 2 . 3356572 3373084 255,255,153 +chr2L 3373084 3449145 inactive 1 . 3373084 3449145 0,0,0 +chr2L 3449145 3470155 active 4 . 3449145 3470155 255,255,153 +chr2L 3470155 3480545 active 2 . 3470155 3480545 255,255,153 +chr2L 3480545 3531009 inactive 1 . 3480545 3531009 0,0,0 +chr2L 3531009 3618140 inactive 1 . 3531009 3618140 0,0,0 +chr2L 3618140 3631953 active 2 . 3618140 3631953 255,255,153 +chr2L 3631953 3657859 active 2 . 3631953 3657859 255,255,153 +chr2L 3657859 3787954 inactive 1 . 3657859 3787954 0,0,0 +chr2L 3787954 3804204 inactive 1 . 3787954 3804204 0,0,0 +chr2L 3804204 3813887 active 2 . 3804204 3813887 255,255,153 +chr2L 3813887 3862669 PcG 0 . 3813887 3862669 56,108,176 +chr2L 3862669 3868079 active 4 . 3862669 3868079 255,255,153 +chr2L 3868079 3872935 active 4 . 3868079 3872935 255,255,153 +chr2L 3872935 4179774 inactive 1 . 3872935 4179774 0,0,0 +chr2L 4179774 4197649 active 4 . 4179774 4197649 255,255,153 +chr2L 4197649 4224073 inactive 1 . 4197649 4224073 0,0,0 +chr2L 4224073 4332232 inactive 1 . 4224073 4332232 0,0,0 +chr2L 4332232 4345595 active 2 . 4332232 4345595 255,255,153 +chr2L 4345595 4382027 inactive 1 . 4345595 4382027 0,0,0 +chr2L 4382027 4441707 inactive 1 . 4382027 4441707 0,0,0 +chr2L 4441707 4463641 active 4 . 4441707 4463641 255,255,153 +chr2L 4463641 4540268 inactive 1 . 4463641 4540268 0,0,0 +chr2L 4540268 4562552 inactive 1 . 4540268 4562552 0,0,0 +chr2L 4562552 4601602 inactive 1 . 4562552 4601602 0,0,0 +chr2L 4601602 4660924 inactive 1 . 4601602 4660924 0,0,0 +chr2L 4660924 4794102 inactive 1 . 4660924 4794102 0,0,0 +chr2L 4794102 4811796 inactive 1 . 4794102 4811796 0,0,0 +chr2L 4811796 4848367 active 2 . 4811796 4848367 255,255,153 +chr2L 4848367 4883338 inactive 1 . 4848367 4883338 0,0,0 +chr2L 4883338 4891916 active 2 . 4883338 4891916 255,255,153 +chr2L 4891916 4945526 inactive 1 . 4891916 4945526 0,0,0 +chr2L 4945526 4971507 active 2 . 4945526 4971507 255,255,153 +chr2L 4971507 5010121 active 4 . 4971507 5010121 255,255,153 +chr2L 5010121 5043139 active 2 . 5010121 5043139 255,255,153 +chr2L 5043139 5055016 active 4 . 5043139 5055016 255,255,153 +chr2L 5055016 5096092 active 2 . 5055016 5096092 255,255,153 +chr2L 5096092 5100123 active 4 . 5096092 5100123 255,255,153 +chr2L 5100123 5216868 active 2 . 5100123 5216868 255,255,153 +chr2L 5216868 5271234 active 2 . 5216868 5271234 255,255,153 +chr2L 5271234 5326192 active 2 . 5271234 5326192 255,255,153 +chr2L 5326192 5366650 inactive 1 . 5326192 5366650 0,0,0 +chr2L 5366650 5403897 PcG 0 . 5366650 5403897 56,108,176 +chr2L 5403897 5519944 inactive 1 . 5403897 5519944 0,0,0 +chr2L 5519944 5542731 active 4 . 5519944 5542731 255,255,153 +chr2L 5542731 5547831 active 4 . 5542731 5547831 255,255,153 +chr2L 5547831 5694620 inactive 1 . 5547831 5694620 0,0,0 +chr2L 5694620 5724533 inactive 1 . 5694620 5724533 0,0,0 +chr2L 5724533 5799371 inactive 1 . 5724533 5799371 0,0,0 +chr2L 5799371 5804104 active 4 . 5799371 5804104 255,255,153 +chr2L 5804104 5907529 inactive 1 . 5804104 5907529 0,0,0 +chr2L 5907529 5944136 active 2 . 5907529 5944136 255,255,153 +chr2L 5944136 5949196 active 4 . 5944136 5949196 255,255,153 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20734780 20758416 active 4 . 20734780 20758416 255,255,153 +chr2L 20758416 20788423 PcG 0 . 20758416 20788423 56,108,176 +chr2L 20788423 20823420 active 2 . 20788423 20823420 255,255,153 +chr2L 20823420 20918771 active 2 . 20823420 20918771 255,255,153 +chr2L 20918771 20923962 active 4 . 20918771 20923962 255,255,153 +chr2L 20923962 21052237 inactive 1 . 20923962 21052237 0,0,0 +chr2L 21052237 21107137 inactive 1 . 21052237 21107137 0,0,0 +chr2L 21107137 21142841 active 2 . 21107137 21142841 255,255,153 +chr2L 21142841 21148787 active 4 . 21142841 21148787 255,255,153 +chr2L 21148787 21179836 active 4 . 21148787 21179836 255,255,153 +chr2L 21179836 21214991 inactive 1 . 21179836 21214991 0,0,0 +chr2L 21214991 21237227 active 4 . 21214991 21237227 255,255,153 +chr2L 21237227 21263021 active 2 . 21237227 21263021 255,255,153 +chr2L 21263021 21309965 active 2 . 21263021 21309965 255,255,153 +chr2L 21309965 21316360 active 2 . 21309965 21316360 255,255,153 +chr2L 21316360 21544995 active 2 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1179912 1237958 HP1 3 . 1179912 1237958 51,160,44 +chr2R 1237958 1257150 HP1 3 . 1237958 1257150 51,160,44 +chr2R 1257150 1276013 HP1 3 . 1257150 1276013 51,160,44 +chr2R 1276013 1313227 HP1 3 . 1276013 1313227 51,160,44 +chr2R 1313227 1338378 HP1 3 . 1313227 1338378 51,160,44 +chr2R 1338378 1541409 HP1 3 . 1338378 1541409 51,160,44 +chr2R 1541409 1551010 active 4 . 1541409 1551010 255,255,153 +chr2R 1551010 1559605 HP1 3 . 1551010 1559605 51,160,44 +chr2R 1559605 1589494 inactive 1 . 1559605 1589494 0,0,0 +chr2R 1589494 1641297 PcG 0 . 1589494 1641297 56,108,176 +chr2R 1641297 1672429 active 2 . 1641297 1672429 255,255,153 +chr2R 1672429 1854033 inactive 1 . 1672429 1854033 0,0,0 +chr2R 1854033 1868609 active 4 . 1854033 1868609 255,255,153 +chr2R 1868609 1903484 active 4 . 1868609 1903484 255,255,153 +chr2R 1903484 1923566 active 4 . 1903484 1923566 255,255,153 +chr2R 1923566 1964288 inactive 1 . 1923566 1964288 0,0,0 +chr2R 1964288 1972742 active 4 . 1964288 1972742 255,255,153 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255,255,153 +chr2R 3555605 3564132 active 2 . 3555605 3564132 255,255,153 +chr2R 3564132 3586764 active 2 . 3564132 3586764 255,255,153 +chr2R 3586764 3623235 active 2 . 3586764 3623235 255,255,153 +chr2R 3623235 3673993 active 2 . 3623235 3673993 255,255,153 +chr2R 3673993 3694187 active 4 . 3673993 3694187 255,255,153 +chr2R 3694187 3717330 active 4 . 3694187 3717330 255,255,153 +chr2R 3717330 3803879 inactive 1 . 3717330 3803879 0,0,0 +chr2R 3803879 3828430 active 4 . 3803879 3828430 255,255,153 +chr2R 3828430 3843665 active 2 . 3828430 3843665 255,255,153 +chr2R 3843665 3877382 active 4 . 3843665 3877382 255,255,153 +chr2R 3877382 3902021 inactive 1 . 3877382 3902021 0,0,0 +chr2R 3902021 3955123 PcG 0 . 3902021 3955123 56,108,176 +chr2R 3955123 3968231 active 4 . 3955123 3968231 255,255,153 +chr2R 3968231 4019427 active 4 . 3968231 4019427 255,255,153 +chr2R 4019427 4031361 active 4 . 4019427 4031361 255,255,153 +chr2R 4031361 4044588 active 2 . 4031361 4044588 255,255,153 +chr2R 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4787919 255,255,153 +chr2R 4787919 4801776 active 4 . 4787919 4801776 255,255,153 +chr2R 4801776 4840083 active 4 . 4801776 4840083 255,255,153 +chr2R 4840083 4954453 inactive 1 . 4840083 4954453 0,0,0 +chr2R 4954453 4980476 inactive 1 . 4954453 4980476 0,0,0 +chr2R 4980476 5005583 active 4 . 4980476 5005583 255,255,153 +chr2R 5005583 5019537 active 4 . 5005583 5019537 255,255,153 +chr2R 5019537 5033084 active 4 . 5019537 5033084 255,255,153 +chr2R 5033084 5053148 active 2 . 5033084 5053148 255,255,153 +chr2R 5053148 5070923 active 4 . 5053148 5070923 255,255,153 +chr2R 5070923 5080239 active 2 . 5070923 5080239 255,255,153 +chr2R 5080239 5094837 PcG 0 . 5080239 5094837 56,108,176 +chr2R 5094837 5139732 inactive 1 . 5094837 5139732 0,0,0 +chr2R 5139732 5172631 active 2 . 5139732 5172631 255,255,153 +chr2R 5172631 5179991 active 4 . 5172631 5179991 255,255,153 +chr2R 5179991 5198210 active 2 . 5179991 5198210 255,255,153 +chr2R 5198210 5277210 inactive 1 . 5198210 5277210 0,0,0 +chr2R 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8648761 255,255,153 +chr2R 8648761 8752216 inactive 1 . 8648761 8752216 0,0,0 +chr2R 8752216 8803982 PcG 0 . 8752216 8803982 56,108,176 +chr2R 8803982 8824249 active 4 . 8803982 8824249 255,255,153 +chr2R 8824249 8843656 PcG 0 . 8824249 8843656 56,108,176 +chr2R 8843656 8885396 PcG 0 . 8843656 8885396 56,108,176 +chr2R 8885396 8931350 PcG 0 . 8885396 8931350 56,108,176 +chr2R 8931350 9020546 PcG 0 . 8931350 9020546 56,108,176 +chr2R 9020546 9055339 active 4 . 9020546 9055339 255,255,153 +chr2R 9055339 9086133 active 2 . 9055339 9086133 255,255,153 +chr2R 9086133 9094637 active 4 . 9086133 9094637 255,255,153 +chr2R 9094637 9110049 active 4 . 9094637 9110049 255,255,153 +chr2R 9110049 9127026 active 4 . 9110049 9127026 255,255,153 +chr2R 9127026 9220242 inactive 1 . 9127026 9220242 0,0,0 +chr2R 9220242 9232896 active 2 . 9220242 9232896 255,255,153 +chr2R 9232896 9295415 inactive 1 . 9232896 9295415 0,0,0 +chr2R 9295415 9318092 active 2 . 9295415 9318092 255,255,153 +chr2R 9318092 9326505 inactive 1 . 9318092 9326505 0,0,0 +chr2R 9326505 9338031 active 4 . 9326505 9338031 255,255,153 +chr2R 9338031 9371115 inactive 1 . 9338031 9371115 0,0,0 +chr2R 9371115 9394485 active 4 . 9371115 9394485 255,255,153 +chr2R 9394485 9434064 active 2 . 9394485 9434064 255,255,153 +chr2R 9434064 9445968 active 4 . 9434064 9445968 255,255,153 +chr2R 9445968 9468232 inactive 1 . 9445968 9468232 0,0,0 +chr2R 9468232 9472383 active 2 . 9468232 9472383 255,255,153 +chr2R 9472383 9692989 inactive 1 . 9472383 9692989 0,0,0 +chr2R 9692989 9712176 active 4 . 9692989 9712176 255,255,153 +chr2R 9712176 9742038 inactive 1 . 9712176 9742038 0,0,0 +chr2R 9742038 9784889 active 4 . 9742038 9784889 255,255,153 +chr2R 9784889 9828747 active 2 . 9784889 9828747 255,255,153 +chr2R 9828747 9840927 active 4 . 9828747 9840927 255,255,153 +chr2R 9840927 9852125 active 2 . 9840927 9852125 255,255,153 +chr2R 9852125 9878380 active 4 . 9852125 9878380 255,255,153 +chr2R 9878380 10029354 active 2 . 9878380 10029354 255,255,153 +chr2R 10029354 10062202 active 4 . 10029354 10062202 255,255,153 +chr2R 10062202 10104738 active 2 . 10062202 10104738 255,255,153 +chr2R 10104738 10124108 active 4 . 10104738 10124108 255,255,153 +chr2R 10124108 10158154 active 4 . 10124108 10158154 255,255,153 +chr2R 10158154 10190465 inactive 1 . 10158154 10190465 0,0,0 +chr2R 10190465 10219902 inactive 1 . 10190465 10219902 0,0,0 +chr2R 10219902 10239945 inactive 1 . 10219902 10239945 0,0,0 +chr2R 10239945 10245101 active 4 . 10239945 10245101 255,255,153 +chr2R 10245101 10314525 inactive 1 . 10245101 10314525 0,0,0 +chr2R 10314525 10321772 inactive 1 . 10314525 10321772 0,0,0 +chr2R 10321772 10368422 PcG 0 . 10321772 10368422 56,108,176 +chr2R 10368422 10391651 active 2 . 10368422 10391651 255,255,153 +chr2R 10391651 10412773 active 2 . 10391651 10412773 255,255,153 +chr2R 10412773 10476653 inactive 1 . 10412773 10476653 0,0,0 +chr2R 10476653 10492292 active 2 . 10476653 10492292 255,255,153 +chr2R 10492292 10512236 active 4 . 10492292 10512236 255,255,153 +chr2R 10512236 10639491 inactive 1 . 10512236 10639491 0,0,0 +chr2R 10639491 10658105 active 2 . 10639491 10658105 255,255,153 +chr2R 10658105 10736033 inactive 1 . 10658105 10736033 0,0,0 +chr2R 10736033 10748394 active 4 . 10736033 10748394 255,255,153 +chr2R 10748394 10758230 active 4 . 10748394 10758230 255,255,153 +chr2R 10758230 10770629 active 2 . 10758230 10770629 255,255,153 +chr2R 10770629 10796388 active 2 . 10770629 10796388 255,255,153 +chr2R 10796388 10823438 inactive 1 . 10796388 10823438 0,0,0 +chr2R 10823438 10850656 active 2 . 10823438 10850656 255,255,153 +chr2R 10850656 10881852 active 2 . 10850656 10881852 255,255,153 +chr2R 10881852 11001772 inactive 1 . 10881852 11001772 0,0,0 +chr2R 11001772 11035963 active 2 . 11001772 11035963 255,255,153 +chr2R 11035963 11105646 inactive 1 . 11035963 11105646 0,0,0 +chr2R 11105646 11132945 inactive 1 . 11105646 11132945 0,0,0 +chr2R 11132945 11197460 inactive 1 . 11132945 11197460 0,0,0 +chr2R 11197460 11232333 active 2 . 11197460 11232333 255,255,153 +chr2R 11232333 11268279 active 2 . 11232333 11268279 255,255,153 +chr2R 11268279 11399053 inactive 1 . 11268279 11399053 0,0,0 +chr2R 11399053 11419785 active 4 . 11399053 11419785 255,255,153 +chr2R 11419785 11425650 inactive 1 . 11419785 11425650 0,0,0 +chr2R 11425650 11453484 inactive 1 . 11425650 11453484 0,0,0 +chr2R 11453484 11461820 active 4 . 11453484 11461820 255,255,153 +chr2R 11461820 11585762 inactive 1 . 11461820 11585762 0,0,0 +chr2R 11585762 11709134 inactive 1 . 11585762 11709134 0,0,0 +chr2R 11709134 11736015 inactive 1 . 11709134 11736015 0,0,0 +chr2R 11736015 11748870 active 2 . 11736015 11748870 255,255,153 +chr2R 11748870 11757381 active 2 . 11748870 11757381 255,255,153 +chr2R 11757381 11809232 inactive 1 . 11757381 11809232 0,0,0 +chr2R 11809232 11827921 active 4 . 11809232 11827921 255,255,153 +chr2R 11827921 11879029 inactive 1 . 11827921 11879029 0,0,0 +chr2R 11879029 11889064 active 4 . 11879029 11889064 255,255,153 +chr2R 11889064 11904597 active 4 . 11889064 11904597 255,255,153 +chr2R 11904597 11915853 active 2 . 11904597 11915853 255,255,153 +chr2R 11915853 11985458 inactive 1 . 11915853 11985458 0,0,0 +chr2R 11985458 11990381 active 4 . 11985458 11990381 255,255,153 +chr2R 11990381 12011978 active 2 . 11990381 12011978 255,255,153 +chr2R 12011978 12026263 active 2 . 12011978 12026263 255,255,153 +chr2R 12026263 12037385 active 4 . 12026263 12037385 255,255,153 +chr2R 12037385 12066586 active 2 . 12037385 12066586 255,255,153 +chr2R 12066586 12074844 active 4 . 12066586 12074844 255,255,153 +chr2R 12074844 12091139 active 4 . 12074844 12091139 255,255,153 +chr2R 12091139 12109605 active 2 . 12091139 12109605 255,255,153 +chr2R 12109605 12118487 active 2 . 12109605 12118487 255,255,153 +chr2R 12118487 12159293 inactive 1 . 12118487 12159293 0,0,0 +chr2R 12159293 12179984 inactive 1 . 12159293 12179984 0,0,0 +chr2R 12179984 12224144 active 2 . 12179984 12224144 255,255,153 +chr2R 12224144 12235195 active 4 . 12224144 12235195 255,255,153 +chr2R 12235195 12439667 inactive 1 . 12235195 12439667 0,0,0 +chr2R 12439667 12459097 inactive 1 . 12439667 12459097 0,0,0 +chr2R 12459097 12466376 active 2 . 12459097 12466376 255,255,153 +chr2R 12466376 12473389 active 2 . 12466376 12473389 255,255,153 +chr2R 12473389 12482009 active 4 . 12473389 12482009 255,255,153 +chr2R 12482009 12547770 inactive 1 . 12482009 12547770 0,0,0 +chr2R 12547770 12660301 inactive 1 . 12547770 12660301 0,0,0 +chr2R 12660301 12670987 inactive 1 . 12660301 12670987 0,0,0 +chr2R 12670987 12687264 active 2 . 12670987 12687264 255,255,153 +chr2R 12687264 12718593 active 2 . 12687264 12718593 255,255,153 +chr2R 12718593 12737709 active 2 . 12718593 12737709 255,255,153 +chr2R 12737709 12756747 active 4 . 12737709 12756747 255,255,153 +chr2R 12756747 12845045 inactive 1 . 12756747 12845045 0,0,0 +chr2R 12845045 12892857 inactive 1 . 12845045 12892857 0,0,0 +chr2R 12892857 12907098 active 4 . 12892857 12907098 255,255,153 +chr2R 12907098 12950332 active 4 . 12907098 12950332 255,255,153 +chr2R 12950332 12986662 active 2 . 12950332 12986662 255,255,153 +chr2R 12986662 13037136 inactive 1 . 12986662 13037136 0,0,0 +chr2R 13037136 13148187 inactive 1 . 13037136 13148187 0,0,0 +chr2R 13148187 13279631 inactive 1 . 13148187 13279631 0,0,0 +chr2R 13279631 13290163 active 2 . 13279631 13290163 255,255,153 +chr2R 13290163 13299442 active 2 . 13290163 13299442 255,255,153 +chr2R 13299442 13308233 active 4 . 13299442 13308233 255,255,153 +chr2R 13308233 13318524 active 4 . 13308233 13318524 255,255,153 +chr2R 13318524 13332469 active 2 . 13318524 13332469 255,255,153 +chr2R 13332469 13339818 active 4 . 13332469 13339818 255,255,153 +chr2R 13339818 13344893 active 2 . 13339818 13344893 255,255,153 +chr2R 13344893 13357462 active 4 . 13344893 13357462 255,255,153 +chr2R 13357462 13375882 active 2 . 13357462 13375882 255,255,153 +chr2R 13375882 13401360 inactive 1 . 13375882 13401360 0,0,0 +chr2R 13401360 13423218 active 4 . 13401360 13423218 255,255,153 +chr2R 13423218 13435750 active 4 . 13423218 13435750 255,255,153 +chr2R 13435750 13452395 active 2 . 13435750 13452395 255,255,153 +chr2R 13452395 13481916 active 4 . 13452395 13481916 255,255,153 +chr2R 13481916 13553447 inactive 1 . 13481916 13553447 0,0,0 +chr2R 13553447 13571268 active 4 . 13553447 13571268 255,255,153 +chr2R 13571268 13585915 active 4 . 13571268 13585915 255,255,153 +chr2R 13585915 13608303 active 2 . 13585915 13608303 255,255,153 +chr2R 13608303 13614562 active 2 . 13608303 13614562 255,255,153 +chr2R 13614562 13620042 active 4 . 13614562 13620042 255,255,153 +chr2R 13620042 13635513 active 4 . 13620042 13635513 255,255,153 +chr2R 13635513 13681157 active 2 . 13635513 13681157 255,255,153 +chr2R 13681157 13733916 PcG 0 . 13681157 13733916 56,108,176 +chr2R 13733916 13760120 active 2 . 13733916 13760120 255,255,153 +chr2R 13760120 13813105 inactive 1 . 13760120 13813105 0,0,0 +chr2R 13813105 13978254 inactive 1 . 13813105 13978254 0,0,0 +chr2R 13978254 14013277 active 2 . 13978254 14013277 255,255,153 +chr2R 14013277 14028120 active 4 . 14013277 14028120 255,255,153 +chr2R 14028120 14045196 active 4 . 14028120 14045196 255,255,153 +chr2R 14045196 14071750 active 4 . 14045196 14071750 255,255,153 +chr2R 14071750 14164681 inactive 1 . 14071750 14164681 0,0,0 +chr2R 14164681 14176053 active 4 . 14164681 14176053 255,255,153 +chr2R 14176053 14285651 inactive 1 . 14176053 14285651 0,0,0 +chr2R 14285651 14299198 active 2 . 14285651 14299198 255,255,153 +chr2R 14299198 14309725 active 4 . 14299198 14309725 255,255,153 +chr2R 14309725 14333947 active 4 . 14309725 14333947 255,255,153 +chr2R 14333947 14411858 inactive 1 . 14333947 14411858 0,0,0 +chr2R 14411858 14440502 active 2 . 14411858 14440502 255,255,153 +chr2R 14440502 14499157 inactive 1 . 14440502 14499157 0,0,0 +chr2R 14499157 14517627 active 4 . 14499157 14517627 255,255,153 +chr2R 14517627 14526576 active 4 . 14517627 14526576 255,255,153 +chr2R 14526576 14540658 active 2 . 14526576 14540658 255,255,153 +chr2R 14540658 14546122 active 2 . 14540658 14546122 255,255,153 +chr2R 14546122 14575973 active 2 . 14546122 14575973 255,255,153 +chr2R 14575973 14599092 active 2 . 14575973 14599092 255,255,153 +chr2R 14599092 14655293 inactive 1 . 14599092 14655293 0,0,0 +chr2R 14655293 14685055 inactive 1 . 14655293 14685055 0,0,0 +chr2R 14685055 14695508 active 2 . 14685055 14695508 255,255,153 +chr2R 14695508 14706949 active 2 . 14695508 14706949 255,255,153 +chr2R 14706949 14722447 active 2 . 14706949 14722447 255,255,153 +chr2R 14722447 14746737 active 4 . 14722447 14746737 255,255,153 +chr2R 14746737 15017154 inactive 1 . 14746737 15017154 0,0,0 +chr2R 15017154 15025049 active 4 . 15017154 15025049 255,255,153 +chr2R 15025049 15029047 active 4 . 15025049 15029047 255,255,153 +chr2R 15029047 15052731 active 2 . 15029047 15052731 255,255,153 +chr2R 15052731 15066329 active 2 . 15052731 15066329 255,255,153 +chr2R 15066329 15114709 inactive 1 . 15066329 15114709 0,0,0 +chr2R 15114709 15141166 inactive 1 . 15114709 15141166 0,0,0 +chr2R 15141166 15177794 PcG 0 . 15141166 15177794 56,108,176 +chr2R 15177794 15198276 active 2 . 15177794 15198276 255,255,153 +chr2R 15198276 15244429 inactive 1 . 15198276 15244429 0,0,0 +chr2R 15244429 15262320 active 2 . 15244429 15262320 255,255,153 +chr2R 15262320 15283709 active 4 . 15262320 15283709 255,255,153 +chr2R 15283709 15312035 active 4 . 15283709 15312035 255,255,153 +chr2R 15312035 15325116 active 4 . 15312035 15325116 255,255,153 +chr2R 15325116 15339068 active 4 . 15325116 15339068 255,255,153 +chr2R 15339068 15384582 active 4 . 15339068 15384582 255,255,153 +chr2R 15384582 15520585 inactive 1 . 15384582 15520585 0,0,0 +chr2R 15520585 15655733 inactive 1 . 15520585 15655733 0,0,0 +chr2R 15655733 16122603 inactive 1 . 15655733 16122603 0,0,0 +chr2R 16122603 16133163 active 2 . 16122603 16133163 255,255,153 +chr2R 16133163 16150486 active 2 . 16133163 16150486 255,255,153 +chr2R 16150486 16166394 active 4 . 16150486 16166394 255,255,153 +chr2R 16166394 16196674 active 2 . 16166394 16196674 255,255,153 +chr2R 16196674 16204346 active 2 . 16196674 16204346 255,255,153 +chr2R 16204346 16218090 active 4 . 16204346 16218090 255,255,153 +chr2R 16218090 16439838 inactive 1 . 16218090 16439838 0,0,0 +chr2R 16439838 16449877 active 2 . 16439838 16449877 255,255,153 +chr2R 16449877 16476769 inactive 1 . 16449877 16476769 0,0,0 +chr2R 16476769 16490155 active 2 . 16476769 16490155 255,255,153 +chr2R 16490155 16505506 active 2 . 16490155 16505506 255,255,153 +chr2R 16505506 16531851 active 4 . 16505506 16531851 255,255,153 +chr2R 16531851 16561365 inactive 1 . 16531851 16561365 0,0,0 +chr2R 16561365 16719892 inactive 1 . 16561365 16719892 0,0,0 +chr2R 16719892 16772175 inactive 1 . 16719892 16772175 0,0,0 +chr2R 16772175 16864188 inactive 1 . 16772175 16864188 0,0,0 +chr2R 16864188 16884759 active 2 . 16864188 16884759 255,255,153 +chr2R 16884759 16896560 active 4 . 16884759 16896560 255,255,153 +chr2R 16896560 16905142 active 4 . 16896560 16905142 255,255,153 +chr2R 16905142 16944816 inactive 1 . 16905142 16944816 0,0,0 +chr2R 16944816 16961497 active 2 . 16944816 16961497 255,255,153 +chr2R 16961497 16984054 active 2 . 16961497 16984054 255,255,153 +chr2R 16984054 17015785 inactive 1 . 16984054 17015785 0,0,0 +chr2R 17015785 17031427 active 2 . 17015785 17031427 255,255,153 +chr2R 17031427 17048256 active 4 . 17031427 17048256 255,255,153 +chr2R 17048256 17058503 active 4 . 17048256 17058503 255,255,153 +chr2R 17058503 17070521 active 2 . 17058503 17070521 255,255,153 +chr2R 17070521 17088018 active 4 . 17070521 17088018 255,255,153 +chr2R 17088018 17139754 inactive 1 . 17088018 17139754 0,0,0 +chr2R 17139754 17169901 inactive 1 . 17139754 17169901 0,0,0 +chr2R 17169901 17183457 active 4 . 17169901 17183457 255,255,153 +chr2R 17183457 17199888 active 2 . 17183457 17199888 255,255,153 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255,255,153 +chr2R 18450174 18484104 active 2 . 18450174 18484104 255,255,153 +chr2R 18484104 18494148 active 4 . 18484104 18494148 255,255,153 +chr2R 18494148 18528747 active 2 . 18494148 18528747 255,255,153 +chr2R 18528747 18558132 active 2 . 18528747 18558132 255,255,153 +chr2R 18558132 18588467 active 2 . 18558132 18588467 255,255,153 +chr2R 18588467 18684708 inactive 1 . 18588467 18684708 0,0,0 +chr2R 18684708 18698121 active 4 . 18684708 18698121 255,255,153 +chr2R 18698121 18720641 inactive 1 . 18698121 18720641 0,0,0 +chr2R 18720641 18741441 inactive 1 . 18720641 18741441 0,0,0 +chr2R 18741441 18776572 inactive 1 . 18741441 18776572 0,0,0 +chr2R 18776572 18824810 active 2 . 18776572 18824810 255,255,153 +chr2R 18824810 18886897 inactive 1 . 18824810 18886897 0,0,0 +chr2R 18886897 18931225 inactive 1 . 18886897 18931225 0,0,0 +chr2R 18931225 18950402 inactive 1 . 18931225 18950402 0,0,0 +chr2R 18950402 18962236 active 4 . 18950402 18962236 255,255,153 +chr2R 18962236 18966877 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255,255,153 +chr2R 19765862 19794604 active 4 . 19765862 19794604 255,255,153 +chr2R 19794604 19828187 active 4 . 19794604 19828187 255,255,153 +chr2R 19828187 19855262 active 4 . 19828187 19855262 255,255,153 +chr2R 19855262 19882373 active 4 . 19855262 19882373 255,255,153 +chr2R 19882373 19917031 active 2 . 19882373 19917031 255,255,153 +chr2R 19917031 19945128 active 4 . 19917031 19945128 255,255,153 +chr2R 19945128 19956318 active 2 . 19945128 19956318 255,255,153 +chr2R 19956318 19974321 active 2 . 19956318 19974321 255,255,153 +chr2R 19974321 20002344 HP1 3 . 19974321 20002344 51,160,44 +chr2R 20002344 20019811 active 2 . 20002344 20019811 255,255,153 +chr2R 20019811 20025783 active 4 . 20019811 20025783 255,255,153 +chr2R 20025783 20062266 active 2 . 20025783 20062266 255,255,153 +chr2R 20062266 20084859 active 4 . 20062266 20084859 255,255,153 +chr2R 20084859 20153159 inactive 1 . 20084859 20153159 0,0,0 +chr2R 20153159 20190394 inactive 1 . 20153159 20190394 0,0,0 +chr2R 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20757345 20791345 255,255,153 +chr2R 20791345 20816010 active 4 . 20791345 20816010 255,255,153 +chr2R 20816010 20827095 inactive 1 . 20816010 20827095 0,0,0 +chr2R 20827095 20852874 active 2 . 20827095 20852874 255,255,153 +chr2R 20852874 20900252 active 2 . 20852874 20900252 255,255,153 +chr2R 20900252 20922849 inactive 1 . 20900252 20922849 0,0,0 +chr2R 20922849 20952115 PcG 0 . 20922849 20952115 56,108,176 +chr2R 20952115 20973525 inactive 1 . 20952115 20973525 0,0,0 +chr2R 20973525 21070302 inactive 1 . 20973525 21070302 0,0,0 +chr2R 21070302 21136358 inactive 1 . 21070302 21136358 0,0,0 +chr3L 146324 176327 active 2 . 146324 176327 255,255,153 +chr3L 176327 200264 active 4 . 176327 200264 255,255,153 +chr3L 200264 225673 active 4 . 200264 225673 255,255,153 +chr3L 225673 246940 active 4 . 225673 246940 255,255,153 +chr3L 246940 265050 active 4 . 246940 265050 255,255,153 +chr3L 265050 293088 active 2 . 265050 293088 255,255,153 +chr3L 293088 319987 active 2 . 293088 319987 255,255,153 +chr3L 319987 324893 active 4 . 319987 324893 255,255,153 +chr3L 324893 361591 active 2 . 324893 361591 255,255,153 +chr3L 361591 442115 PcG 0 . 361591 442115 56,108,176 +chr3L 442115 506680 inactive 1 . 442115 506680 0,0,0 +chr3L 506680 540757 active 2 . 506680 540757 255,255,153 +chr3L 540757 568394 active 2 . 540757 568394 255,255,153 +chr3L 568394 593465 active 2 . 568394 593465 255,255,153 +chr3L 593465 604763 active 2 . 593465 604763 255,255,153 +chr3L 604763 629250 PcG 0 . 604763 629250 56,108,176 +chr3L 629250 654403 active 2 . 629250 654403 255,255,153 +chr3L 654403 681632 inactive 1 . 654403 681632 0,0,0 +chr3L 681632 712528 active 2 . 681632 712528 255,255,153 +chr3L 712528 749461 PcG 0 . 712528 749461 56,108,176 +chr3L 749461 833807 active 2 . 749461 833807 255,255,153 +chr3L 833807 854435 active 2 . 833807 854435 255,255,153 +chr3L 854435 872091 active 2 . 854435 872091 255,255,153 +chr3L 872091 883470 active 2 . 872091 883470 255,255,153 +chr3L 883470 1035259 inactive 1 . 883470 1035259 0,0,0 +chr3L 1035259 1188493 PcG 0 . 1035259 1188493 56,108,176 +chr3L 1188493 1207068 PcG 0 . 1188493 1207068 56,108,176 +chr3L 1207068 1233344 inactive 1 . 1207068 1233344 0,0,0 +chr3L 1233344 1298581 inactive 1 . 1233344 1298581 0,0,0 +chr3L 1298581 1318877 active 4 . 1298581 1318877 255,255,153 +chr3L 1318877 1334666 active 4 . 1318877 1334666 255,255,153 +chr3L 1334666 1351326 active 4 . 1334666 1351326 255,255,153 +chr3L 1351326 1465223 inactive 1 . 1351326 1465223 0,0,0 +chr3L 1465223 1490831 inactive 1 . 1465223 1490831 0,0,0 +chr3L 1490831 1496644 active 4 . 1490831 1496644 255,255,153 +chr3L 1496644 1503068 active 4 . 1496644 1503068 255,255,153 +chr3L 1503068 1537053 active 4 . 1503068 1537053 255,255,153 +chr3L 1537053 1546431 active 4 . 1537053 1546431 255,255,153 +chr3L 1546431 1570162 active 4 . 1546431 1570162 255,255,153 +chr3L 1570162 1575980 active 4 . 1570162 1575980 255,255,153 +chr3L 1575980 1602177 active 2 . 1575980 1602177 255,255,153 +chr3L 1602177 1618490 inactive 1 . 1602177 1618490 0,0,0 +chr3L 1618490 1630007 active 4 . 1618490 1630007 255,255,153 +chr3L 1630007 1647496 active 2 . 1630007 1647496 255,255,153 +chr3L 1647496 1669074 active 4 . 1647496 1669074 255,255,153 +chr3L 1669074 1730571 inactive 1 . 1669074 1730571 0,0,0 +chr3L 1730571 1740770 inactive 1 . 1730571 1740770 0,0,0 +chr3L 1740770 1755667 active 2 . 1740770 1755667 255,255,153 +chr3L 1755667 1795748 active 4 . 1755667 1795748 255,255,153 +chr3L 1795748 1802811 active 4 . 1795748 1802811 255,255,153 +chr3L 1802811 1856885 inactive 1 . 1802811 1856885 0,0,0 +chr3L 1856885 1877629 active 4 . 1856885 1877629 255,255,153 +chr3L 1877629 1940885 inactive 1 . 1877629 1940885 0,0,0 +chr3L 1940885 1970462 HP1 3 . 1940885 1970462 51,160,44 +chr3L 1970462 2107775 inactive 1 . 1970462 2107775 0,0,0 +chr3L 2107775 2152560 inactive 1 . 2107775 2152560 0,0,0 +chr3L 2152560 2167865 inactive 1 . 2152560 2167865 0,0,0 +chr3L 2167865 2244216 inactive 1 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3144095 3149340 active 4 . 3144095 3149340 255,255,153 +chr3L 3149340 3165074 active 4 . 3149340 3165074 255,255,153 +chr3L 3165074 3197795 active 4 . 3165074 3197795 255,255,153 +chr3L 3197795 3225015 active 4 . 3197795 3225015 255,255,153 +chr3L 3225015 3239450 active 4 . 3225015 3239450 255,255,153 +chr3L 3239450 3253592 active 2 . 3239450 3253592 255,255,153 +chr3L 3253592 3304023 inactive 1 . 3253592 3304023 0,0,0 +chr3L 3304023 3319384 active 2 . 3304023 3319384 255,255,153 +chr3L 3319384 3327056 active 4 . 3319384 3327056 255,255,153 +chr3L 3327056 3334818 active 2 . 3327056 3334818 255,255,153 +chr3L 3334818 3378027 active 4 . 3334818 3378027 255,255,153 +chr3L 3378027 3407831 active 2 . 3378027 3407831 255,255,153 +chr3L 3407831 3457307 active 2 . 3407831 3457307 255,255,153 +chr3L 3457307 3472717 active 4 . 3457307 3472717 255,255,153 +chr3L 3472717 3516134 inactive 1 . 3472717 3516134 0,0,0 +chr3L 3516134 3593617 active 2 . 3516134 3593617 255,255,153 +chr3L 3593617 3616822 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5334596 5349638 255,255,153 +chr3L 5349638 5352996 active 4 . 5349638 5352996 255,255,153 +chr3L 5352996 5361536 active 4 . 5352996 5361536 255,255,153 +chr3L 5361536 5558088 inactive 1 . 5361536 5558088 0,0,0 +chr3L 5558088 5576834 inactive 1 . 5558088 5576834 0,0,0 +chr3L 5576834 5601639 active 2 . 5576834 5601639 255,255,153 +chr3L 5601639 5649483 inactive 1 . 5601639 5649483 0,0,0 +chr3L 5649483 5742332 inactive 1 . 5649483 5742332 0,0,0 +chr3L 5742332 5764237 active 4 . 5742332 5764237 255,255,153 +chr3L 5764237 5806342 active 4 . 5764237 5806342 255,255,153 +chr3L 5806342 5863393 inactive 1 . 5806342 5863393 0,0,0 +chr3L 5863393 5928576 inactive 1 . 5863393 5928576 0,0,0 +chr3L 5928576 6047977 inactive 1 . 5928576 6047977 0,0,0 +chr3L 6047977 6117915 inactive 1 . 6047977 6117915 0,0,0 +chr3L 6117915 6162075 inactive 1 . 6117915 6162075 0,0,0 +chr3L 6162075 6212140 active 4 . 6162075 6212140 255,255,153 +chr3L 6212140 6258156 inactive 1 . 6212140 6258156 0,0,0 +chr3L 6258156 6477034 inactive 1 . 6258156 6477034 0,0,0 +chr3L 6477034 6488974 active 4 . 6477034 6488974 255,255,153 +chr3L 6488974 6543801 inactive 1 . 6488974 6543801 0,0,0 +chr3L 6543801 6599080 inactive 1 . 6543801 6599080 0,0,0 +chr3L 6599080 6681204 inactive 1 . 6599080 6681204 0,0,0 +chr3L 6681204 6721155 inactive 1 . 6681204 6721155 0,0,0 +chr3L 6721155 6735461 active 4 . 6721155 6735461 255,255,153 +chr3L 6735461 6752298 active 4 . 6735461 6752298 255,255,153 +chr3L 6752298 6937231 inactive 1 . 6752298 6937231 0,0,0 +chr3L 6937231 6957807 active 4 . 6937231 6957807 255,255,153 +chr3L 6957807 6973332 active 2 . 6957807 6973332 255,255,153 +chr3L 6973332 6988393 PcG 0 . 6973332 6988393 56,108,176 +chr3L 6988393 7086783 inactive 1 . 6988393 7086783 0,0,0 +chr3L 7086783 7118503 inactive 1 . 7086783 7118503 0,0,0 +chr3L 7118503 7150122 active 2 . 7118503 7150122 255,255,153 +chr3L 7150122 7243940 inactive 1 . 7150122 7243940 0,0,0 +chr3L 7243940 7313302 inactive 1 . 7243940 7313302 0,0,0 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8435177 8500583 active 2 . 8435177 8500583 255,255,153 +chr3L 8500583 8518506 active 4 . 8500583 8518506 255,255,153 +chr3L 8518506 8538621 active 2 . 8518506 8538621 255,255,153 +chr3L 8538621 8557761 active 2 . 8538621 8557761 255,255,153 +chr3L 8557761 8598080 active 2 . 8557761 8598080 255,255,153 +chr3L 8598080 8621313 inactive 1 . 8598080 8621313 0,0,0 +chr3L 8621313 8627396 active 2 . 8621313 8627396 255,255,153 +chr3L 8627396 8645194 PcG 0 . 8627396 8645194 56,108,176 +chr3L 8645194 8669781 active 2 . 8645194 8669781 255,255,153 +chr3L 8669781 8690250 active 2 . 8669781 8690250 255,255,153 +chr3L 8690250 8714073 active 2 . 8690250 8714073 255,255,153 +chr3L 8714073 8741823 inactive 1 . 8714073 8741823 0,0,0 +chr3L 8741823 8884684 inactive 1 . 8741823 8884684 0,0,0 +chr3L 8884684 8946792 inactive 1 . 8884684 8946792 0,0,0 +chr3L 8946792 8961594 active 2 . 8946792 8961594 255,255,153 +chr3L 8961594 8979070 active 4 . 8961594 8979070 255,255,153 +chr3L 8979070 8991566 active 4 . 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9617097 9668705 active 2 . 9617097 9668705 255,255,153 +chr3L 9668705 9689759 active 2 . 9668705 9689759 255,255,153 +chr3L 9689759 9707515 active 4 . 9689759 9707515 255,255,153 +chr3L 9707515 9722893 active 4 . 9707515 9722893 255,255,153 +chr3L 9722893 9755007 inactive 1 . 9722893 9755007 0,0,0 +chr3L 9755007 9830440 inactive 1 . 9755007 9830440 0,0,0 +chr3L 9830440 9848396 active 2 . 9830440 9848396 255,255,153 +chr3L 9848396 9853113 active 2 . 9848396 9853113 255,255,153 +chr3L 9853113 9882006 active 2 . 9853113 9882006 255,255,153 +chr3L 9882006 9892563 active 4 . 9882006 9892563 255,255,153 +chr3L 9892563 9961409 inactive 1 . 9892563 9961409 0,0,0 +chr3L 9961409 10218969 inactive 1 . 9961409 10218969 0,0,0 +chr3L 10218969 10286642 inactive 1 . 10218969 10286642 0,0,0 +chr3L 10286642 10379140 inactive 1 . 10286642 10379140 0,0,0 +chr3L 10379140 10456542 inactive 1 . 10379140 10456542 0,0,0 +chr3L 10456542 10623942 inactive 1 . 10456542 10623942 0,0,0 +chr3L 10623942 10654069 active 2 . 10623942 10654069 255,255,153 +chr3L 10654069 10691941 active 2 . 10654069 10691941 255,255,153 +chr3L 10691941 10861420 inactive 1 . 10691941 10861420 0,0,0 +chr3L 10861420 10879757 active 4 . 10861420 10879757 255,255,153 +chr3L 10879757 10892217 active 2 . 10879757 10892217 255,255,153 +chr3L 10892217 11035048 inactive 1 . 10892217 11035048 0,0,0 +chr3L 11035048 11054970 inactive 1 . 11035048 11054970 0,0,0 +chr3L 11054970 11063375 active 4 . 11054970 11063375 255,255,153 +chr3L 11063375 11081717 active 4 . 11063375 11081717 255,255,153 +chr3L 11081717 11089959 active 2 . 11081717 11089959 255,255,153 +chr3L 11089959 11116217 active 2 . 11089959 11116217 255,255,153 +chr3L 11116217 11163226 inactive 1 . 11116217 11163226 0,0,0 +chr3L 11163226 11189494 active 2 . 11163226 11189494 255,255,153 +chr3L 11189494 11198868 active 4 . 11189494 11198868 255,255,153 +chr3L 11198868 11232744 active 4 . 11198868 11232744 255,255,153 +chr3L 11232744 11286224 active 2 . 11232744 11286224 255,255,153 +chr3L 11286224 11482255 inactive 1 . 11286224 11482255 0,0,0 +chr3L 11482255 11504444 active 2 . 11482255 11504444 255,255,153 +chr3L 11504444 11515981 inactive 1 . 11504444 11515981 0,0,0 +chr3L 11515981 11555824 active 2 . 11515981 11555824 255,255,153 +chr3L 11555824 11612668 inactive 1 . 11555824 11612668 0,0,0 +chr3L 11612668 11642222 active 2 . 11612668 11642222 255,255,153 +chr3L 11642222 11674605 inactive 1 . 11642222 11674605 0,0,0 +chr3L 11674605 11690054 active 4 . 11674605 11690054 255,255,153 +chr3L 11690054 11704655 active 2 . 11690054 11704655 255,255,153 +chr3L 11704655 11782529 inactive 1 . 11704655 11782529 0,0,0 +chr3L 11782529 11808597 active 2 . 11782529 11808597 255,255,153 +chr3L 11808597 11826518 active 4 . 11808597 11826518 255,255,153 +chr3L 11826518 11986526 inactive 1 . 11826518 11986526 0,0,0 +chr3L 11986526 11996025 active 4 . 11986526 11996025 255,255,153 +chr3L 11996025 12050613 inactive 1 . 11996025 12050613 0,0,0 +chr3L 12050613 12059992 inactive 1 . 12050613 12059992 0,0,0 +chr3L 12059992 12109016 inactive 1 . 12059992 12109016 0,0,0 +chr3L 12109016 12132909 active 2 . 12109016 12132909 255,255,153 +chr3L 12132909 12140710 active 4 . 12132909 12140710 255,255,153 +chr3L 12140710 12150704 active 4 . 12140710 12150704 255,255,153 +chr3L 12150704 12180616 inactive 1 . 12150704 12180616 0,0,0 +chr3L 12180616 12199492 active 2 . 12180616 12199492 255,255,153 +chr3L 12199492 12257682 inactive 1 . 12199492 12257682 0,0,0 +chr3L 12257682 12296686 active 2 . 12257682 12296686 255,255,153 +chr3L 12296686 12384503 inactive 1 . 12296686 12384503 0,0,0 +chr3L 12384503 12410947 active 4 . 12384503 12410947 255,255,153 +chr3L 12410947 12464469 PcG 0 . 12410947 12464469 56,108,176 +chr3L 12464469 12483310 inactive 1 . 12464469 12483310 0,0,0 +chr3L 12483310 12494454 active 2 . 12483310 12494454 255,255,153 +chr3L 12494454 12508479 active 4 . 12494454 12508479 255,255,153 +chr3L 12508479 12520015 active 4 . 12508479 12520015 255,255,153 +chr3L 12520015 12530235 active 4 . 12520015 12530235 255,255,153 +chr3L 12530235 12685681 PcG 0 . 12530235 12685681 56,108,176 +chr3L 12685681 12726494 PcG 0 . 12685681 12726494 56,108,176 +chr3L 12726494 12766793 HP1 3 . 12726494 12766793 51,160,44 +chr3L 12766793 12799050 active 2 . 12766793 12799050 255,255,153 +chr3L 12799050 12808555 active 4 . 12799050 12808555 255,255,153 +chr3L 12808555 12827487 active 2 . 12808555 12827487 255,255,153 +chr3L 12827487 12836150 active 2 . 12827487 12836150 255,255,153 +chr3L 12836150 12843502 active 4 . 12836150 12843502 255,255,153 +chr3L 12843502 12999682 inactive 1 . 12843502 12999682 0,0,0 +chr3L 12999682 13016604 active 4 . 12999682 13016604 255,255,153 +chr3L 13016604 13039937 active 2 . 13016604 13039937 255,255,153 +chr3L 13039937 13383519 inactive 1 . 13039937 13383519 0,0,0 +chr3L 13383519 13404198 inactive 1 . 13383519 13404198 0,0,0 +chr3L 13404198 13435207 inactive 1 . 13404198 13435207 0,0,0 +chr3L 13435207 13443860 active 4 . 13435207 13443860 255,255,153 +chr3L 13443860 13480292 active 2 . 13443860 13480292 255,255,153 +chr3L 13480292 13495717 active 2 . 13480292 13495717 255,255,153 +chr3L 13495717 13506169 active 4 . 13495717 13506169 255,255,153 +chr3L 13506169 13838318 inactive 1 . 13506169 13838318 0,0,0 +chr3L 13838318 13853456 active 4 . 13838318 13853456 255,255,153 +chr3L 13853456 13871728 active 2 . 13853456 13871728 255,255,153 +chr3L 13871728 13893485 inactive 1 . 13871728 13893485 0,0,0 +chr3L 13893485 13913882 active 2 . 13893485 13913882 255,255,153 +chr3L 13913882 13986895 active 2 . 13913882 13986895 255,255,153 +chr3L 13986895 13996326 active 4 . 13986895 13996326 255,255,153 +chr3L 13996326 14021781 active 4 . 13996326 14021781 255,255,153 +chr3L 14021781 14031384 active 4 . 14021781 14031384 255,255,153 +chr3L 14031384 14043937 active 4 . 14031384 14043937 255,255,153 +chr3L 14043937 14064921 active 2 . 14043937 14064921 255,255,153 +chr3L 14064921 14105164 inactive 1 . 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15819228 255,255,153 +chr3L 15819228 15831015 active 4 . 15819228 15831015 255,255,153 +chr3L 15831015 15888340 inactive 1 . 15831015 15888340 0,0,0 +chr3L 15888340 15947814 inactive 1 . 15888340 15947814 0,0,0 +chr3L 15947814 15975282 active 4 . 15947814 15975282 255,255,153 +chr3L 15975282 15981209 active 4 . 15975282 15981209 255,255,153 +chr3L 15981209 15997969 active 2 . 15981209 15997969 255,255,153 +chr3L 15997969 16005165 active 4 . 15997969 16005165 255,255,153 +chr3L 16005165 16030501 inactive 1 . 16005165 16030501 0,0,0 +chr3L 16030501 16045339 active 2 . 16030501 16045339 255,255,153 +chr3L 16045339 16083568 active 2 . 16045339 16083568 255,255,153 +chr3L 16083568 16106949 active 4 . 16083568 16106949 255,255,153 +chr3L 16106949 16114724 active 4 . 16106949 16114724 255,255,153 +chr3L 16114724 16122331 active 4 . 16114724 16122331 255,255,153 +chr3L 16122331 16132239 active 4 . 16122331 16132239 255,255,153 +chr3L 16132239 16222831 active 2 . 16132239 16222831 255,255,153 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24125560 24206724 HP1 3 . 24125560 24206724 51,160,44 +chr3L 24206724 24276446 HP1 3 . 24206724 24276446 51,160,44 +chr3L 24276446 24535197 HP1 3 . 24276446 24535197 51,160,44 +chr3R 46504 55895 active 4 . 46504 55895 255,255,153 +chr3R 55895 133108 active 2 . 55895 133108 255,255,153 +chr3R 133108 162614 active 4 . 133108 162614 255,255,153 +chr3R 162614 204920 inactive 1 . 162614 204920 0,0,0 +chr3R 204920 228941 active 4 . 204920 228941 255,255,153 +chr3R 228941 264629 active 4 . 228941 264629 255,255,153 +chr3R 264629 305509 active 2 . 264629 305509 255,255,153 +chr3R 305509 467852 inactive 1 . 305509 467852 0,0,0 +chr3R 467852 475233 active 2 . 467852 475233 255,255,153 +chr3R 475233 485269 active 4 . 475233 485269 255,255,153 +chr3R 485269 540156 inactive 1 . 485269 540156 0,0,0 +chr3R 540156 566689 inactive 1 . 540156 566689 0,0,0 +chr3R 566689 574980 active 4 . 566689 574980 255,255,153 +chr3R 574980 601192 inactive 1 . 574980 601192 0,0,0 +chr3R 601192 648226 active 2 . 601192 648226 255,255,153 +chr3R 648226 732343 PcG 0 . 648226 732343 56,108,176 +chr3R 732343 736217 active 4 . 732343 736217 255,255,153 +chr3R 736217 778181 active 4 . 736217 778181 255,255,153 +chr3R 778181 796343 inactive 1 . 778181 796343 0,0,0 +chr3R 796343 953412 PcG 0 . 796343 953412 56,108,176 +chr3R 953412 1043188 inactive 1 . 953412 1043188 0,0,0 +chr3R 1043188 1058003 active 4 . 1043188 1058003 255,255,153 +chr3R 1058003 1077096 active 2 . 1058003 1077096 255,255,153 +chr3R 1077096 1097091 active 2 . 1077096 1097091 255,255,153 +chr3R 1097091 1123625 active 2 . 1097091 1123625 255,255,153 +chr3R 1123625 1180568 active 2 . 1123625 1180568 255,255,153 +chr3R 1180568 1197349 active 2 . 1180568 1197349 255,255,153 +chr3R 1197349 1292601 inactive 1 . 1197349 1292601 0,0,0 +chr3R 1292601 1311220 active 4 . 1292601 1311220 255,255,153 +chr3R 1311220 1348859 inactive 1 . 1311220 1348859 0,0,0 +chr3R 1348859 1373120 HP1 3 . 1348859 1373120 51,160,44 +chr3R 1373120 1394379 active 4 . 1373120 1394379 255,255,153 +chr3R 1394379 1417651 active 4 . 1394379 1417651 255,255,153 +chr3R 1417651 1426101 active 4 . 1417651 1426101 255,255,153 +chr3R 1426101 1438354 active 4 . 1426101 1438354 255,255,153 +chr3R 1438354 1450065 active 4 . 1438354 1450065 255,255,153 +chr3R 1450065 1458950 active 2 . 1450065 1458950 255,255,153 +chr3R 1458950 1474556 active 4 . 1458950 1474556 255,255,153 +chr3R 1474556 1486799 active 4 . 1474556 1486799 255,255,153 +chr3R 1486799 1495115 active 4 . 1486799 1495115 255,255,153 +chr3R 1495115 1512271 active 2 . 1495115 1512271 255,255,153 +chr3R 1512271 1559284 inactive 1 . 1512271 1559284 0,0,0 +chr3R 1559284 1584997 active 4 . 1559284 1584997 255,255,153 +chr3R 1584997 1604815 inactive 1 . 1584997 1604815 0,0,0 +chr3R 1604815 1648541 active 2 . 1604815 1648541 255,255,153 +chr3R 1648541 1688361 active 2 . 1648541 1688361 255,255,153 +chr3R 1688361 1834885 inactive 1 . 1688361 1834885 0,0,0 +chr3R 1834885 1892686 inactive 1 . 1834885 1892686 0,0,0 +chr3R 1892686 1997390 inactive 1 . 1892686 1997390 0,0,0 +chr3R 1997390 2160850 inactive 1 . 1997390 2160850 0,0,0 +chr3R 2160850 2177322 inactive 1 . 2160850 2177322 0,0,0 +chr3R 2177322 2194857 active 4 . 2177322 2194857 255,255,153 +chr3R 2194857 2209380 active 4 . 2194857 2209380 255,255,153 +chr3R 2209380 2232220 active 2 . 2209380 2232220 255,255,153 +chr3R 2232220 2285253 active 2 . 2232220 2285253 255,255,153 +chr3R 2285253 2466236 inactive 1 . 2285253 2466236 0,0,0 +chr3R 2466236 2486408 active 4 . 2466236 2486408 255,255,153 +chr3R 2486408 2585501 inactive 1 . 2486408 2585501 0,0,0 +chr3R 2585501 2648032 PcG 0 . 2585501 2648032 56,108,176 +chr3R 2648032 2892958 PcG 0 . 2648032 2892958 56,108,176 +chr3R 2892958 2901186 active 4 . 2892958 2901186 255,255,153 +chr3R 2901186 2912421 active 4 . 2901186 2912421 255,255,153 +chr3R 2912421 2954052 active 2 . 2912421 2954052 255,255,153 +chr3R 2954052 2969703 inactive 1 . 2954052 2969703 0,0,0 +chr3R 2969703 2980850 active 4 . 2969703 2980850 255,255,153 +chr3R 2980850 3012803 inactive 1 . 2980850 3012803 0,0,0 +chr3R 3012803 3301628 inactive 1 . 3012803 3301628 0,0,0 +chr3R 3301628 3334601 active 2 . 3301628 3334601 255,255,153 +chr3R 3334601 3376630 active 2 . 3334601 3376630 255,255,153 +chr3R 3376630 3606201 inactive 1 . 3376630 3606201 0,0,0 +chr3R 3606201 3636366 inactive 1 . 3606201 3636366 0,0,0 +chr3R 3636366 3711341 inactive 1 . 3636366 3711341 0,0,0 +chr3R 3711341 3727806 active 2 . 3711341 3727806 255,255,153 +chr3R 3727806 3747841 active 4 . 3727806 3747841 255,255,153 +chr3R 3747841 3803263 inactive 1 . 3747841 3803263 0,0,0 +chr3R 3803263 3825243 inactive 1 . 3803263 3825243 0,0,0 +chr3R 3825243 3834175 active 4 . 3825243 3834175 255,255,153 +chr3R 3834175 3856690 active 4 . 3834175 3856690 255,255,153 +chr3R 3856690 3858975 active 4 . 3856690 3858975 255,255,153 +chr3R 3858975 3922855 inactive 1 . 3858975 3922855 0,0,0 +chr3R 3922855 3952850 active 2 . 3922855 3952850 255,255,153 +chr3R 3952850 4058768 PcG 0 . 3952850 4058768 56,108,176 +chr3R 4058768 4095880 active 2 . 4058768 4095880 255,255,153 +chr3R 4095880 4131039 inactive 1 . 4095880 4131039 0,0,0 +chr3R 4131039 4166874 inactive 1 . 4131039 4166874 0,0,0 +chr3R 4166874 4188447 active 2 . 4166874 4188447 255,255,153 +chr3R 4188447 4342926 inactive 1 . 4188447 4342926 0,0,0 +chr3R 4342926 4467352 inactive 1 . 4342926 4467352 0,0,0 +chr3R 4467352 4489680 active 4 . 4467352 4489680 255,255,153 +chr3R 4489680 4495342 active 4 . 4489680 4495342 255,255,153 +chr3R 4495342 4537865 inactive 1 . 4495342 4537865 0,0,0 +chr3R 4537865 4573162 active 4 . 4537865 4573162 255,255,153 +chr3R 4573162 4626567 inactive 1 . 4573162 4626567 0,0,0 +chr3R 4626567 4646967 active 2 . 4626567 4646967 255,255,153 +chr3R 4646967 4673860 active 4 . 4646967 4673860 255,255,153 +chr3R 4673860 4764388 active 2 . 4673860 4764388 255,255,153 +chr3R 4764388 4771160 active 4 . 4764388 4771160 255,255,153 +chr3R 4771160 4807690 inactive 1 . 4771160 4807690 0,0,0 +chr3R 4807690 4829578 active 4 . 4807690 4829578 255,255,153 +chr3R 4829578 4845432 active 4 . 4829578 4845432 255,255,153 +chr3R 4845432 4864798 active 2 . 4845432 4864798 255,255,153 +chr3R 4864798 4883345 active 2 . 4864798 4883345 255,255,153 +chr3R 4883345 4892021 active 4 . 4883345 4892021 255,255,153 +chr3R 4892021 5064000 inactive 1 . 4892021 5064000 0,0,0 +chr3R 5064000 5086388 active 4 . 5064000 5086388 255,255,153 +chr3R 5086388 5092721 active 4 . 5086388 5092721 255,255,153 +chr3R 5092721 5154558 inactive 1 . 5092721 5154558 0,0,0 +chr3R 5154558 5160877 active 4 . 5154558 5160877 255,255,153 +chr3R 5160877 5226827 active 2 . 5160877 5226827 255,255,153 +chr3R 5226827 5323137 active 2 . 5226827 5323137 255,255,153 +chr3R 5323137 5342119 active 2 . 5323137 5342119 255,255,153 +chr3R 5342119 5377218 active 2 . 5342119 5377218 255,255,153 +chr3R 5377218 5400133 active 4 . 5377218 5400133 255,255,153 +chr3R 5400133 5408838 active 4 . 5400133 5408838 255,255,153 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active 2 . 5904554 5927311 255,255,153 +chr3R 5927311 5934960 active 4 . 5927311 5934960 255,255,153 +chr3R 5934960 5960084 active 2 . 5934960 5960084 255,255,153 +chr3R 5960084 5970513 active 2 . 5960084 5970513 255,255,153 +chr3R 5970513 5996126 active 2 . 5970513 5996126 255,255,153 +chr3R 5996126 6090180 inactive 1 . 5996126 6090180 0,0,0 +chr3R 6090180 6137848 inactive 1 . 6090180 6137848 0,0,0 +chr3R 6137848 6175832 active 4 . 6137848 6175832 255,255,153 +chr3R 6175832 6208368 active 2 . 6175832 6208368 255,255,153 +chr3R 6208368 6242222 active 2 . 6208368 6242222 255,255,153 +chr3R 6242222 6362891 inactive 1 . 6242222 6362891 0,0,0 +chr3R 6362891 6499738 PcG 0 . 6362891 6499738 56,108,176 +chr3R 6499738 6522144 inactive 1 . 6499738 6522144 0,0,0 +chr3R 6522144 6534730 active 4 . 6522144 6534730 255,255,153 +chr3R 6534730 6586874 inactive 1 . 6534730 6586874 0,0,0 +chr3R 6586874 6677248 inactive 1 . 6586874 6677248 0,0,0 +chr3R 6677248 6694661 active 4 . 6677248 6694661 255,255,153 +chr3R 6694661 6710712 active 2 . 6694661 6710712 255,255,153 +chr3R 6710712 6721104 active 4 . 6710712 6721104 255,255,153 +chr3R 6721104 6945355 inactive 1 . 6721104 6945355 0,0,0 +chr3R 6945355 7023213 inactive 1 . 6945355 7023213 0,0,0 +chr3R 7023213 7038082 active 2 . 7023213 7038082 255,255,153 +chr3R 7038082 7069908 active 4 . 7038082 7069908 255,255,153 +chr3R 7069908 7165877 inactive 1 . 7069908 7165877 0,0,0 +chr3R 7165877 7179659 PcG 0 . 7165877 7179659 56,108,176 +chr3R 7179659 7233774 PcG 0 . 7179659 7233774 56,108,176 +chr3R 7233774 7264134 active 4 . 7233774 7264134 255,255,153 +chr3R 7264134 7383782 inactive 1 . 7264134 7383782 0,0,0 +chr3R 7383782 7388521 active 4 . 7383782 7388521 255,255,153 +chr3R 7388521 7416176 active 4 . 7388521 7416176 255,255,153 +chr3R 7416176 7439390 active 2 . 7416176 7439390 255,255,153 +chr3R 7439390 7449603 active 2 . 7439390 7449603 255,255,153 +chr3R 7449603 7476257 active 4 . 7449603 7476257 255,255,153 +chr3R 7476257 7491471 active 2 . 7476257 7491471 255,255,153 +chr3R 7491471 7560748 inactive 1 . 7491471 7560748 0,0,0 +chr3R 7560748 7589703 active 4 . 7560748 7589703 255,255,153 +chr3R 7589703 7644985 active 2 . 7589703 7644985 255,255,153 +chr3R 7644985 7648439 active 4 . 7644985 7648439 255,255,153 +chr3R 7648439 7695597 inactive 1 . 7648439 7695597 0,0,0 +chr3R 7695597 7775004 inactive 1 . 7695597 7775004 0,0,0 +chr3R 7775004 7823523 active 2 . 7775004 7823523 255,255,153 +chr3R 7823523 7842547 active 2 . 7823523 7842547 255,255,153 +chr3R 7842547 7904449 inactive 1 . 7842547 7904449 0,0,0 +chr3R 7904449 8047763 inactive 1 . 7904449 8047763 0,0,0 +chr3R 8047763 8175009 inactive 1 . 8047763 8175009 0,0,0 +chr3R 8175009 8181959 active 4 . 8175009 8181959 255,255,153 +chr3R 8181959 8209116 active 2 . 8181959 8209116 255,255,153 +chr3R 8209116 8233946 active 2 . 8209116 8233946 255,255,153 +chr3R 8233946 8248500 active 4 . 8233946 8248500 255,255,153 +chr3R 8248500 8259800 active 4 . 8248500 8259800 255,255,153 +chr3R 8259800 8268377 active 2 . 8259800 8268377 255,255,153 +chr3R 8268377 8326410 active 2 . 8268377 8326410 255,255,153 +chr3R 8326410 8453474 inactive 1 . 8326410 8453474 0,0,0 +chr3R 8453474 8464510 active 2 . 8453474 8464510 255,255,153 +chr3R 8464510 8501801 inactive 1 . 8464510 8501801 0,0,0 +chr3R 8501801 8523500 active 2 . 8501801 8523500 255,255,153 +chr3R 8523500 8538345 active 4 . 8523500 8538345 255,255,153 +chr3R 8538345 8549574 active 2 . 8538345 8549574 255,255,153 +chr3R 8549574 8786972 inactive 1 . 8549574 8786972 0,0,0 +chr3R 8786972 8806510 inactive 1 . 8786972 8806510 0,0,0 +chr3R 8806510 8838077 active 4 . 8806510 8838077 255,255,153 +chr3R 8838077 8856055 active 4 . 8838077 8856055 255,255,153 +chr3R 8856055 8877609 inactive 1 . 8856055 8877609 0,0,0 +chr3R 8877609 8882558 active 4 . 8877609 8882558 255,255,153 +chr3R 8882558 8904549 PcG 0 . 8882558 8904549 56,108,176 +chr3R 8904549 9080424 inactive 1 . 8904549 9080424 0,0,0 +chr3R 9080424 9149151 inactive 1 . 9080424 9149151 0,0,0 +chr3R 9149151 9189326 inactive 1 . 9149151 9189326 0,0,0 +chr3R 9189326 9207584 active 2 . 9189326 9207584 255,255,153 +chr3R 9207584 9228510 active 2 . 9207584 9228510 255,255,153 +chr3R 9228510 9260749 inactive 1 . 9228510 9260749 0,0,0 +chr3R 9260749 9462279 inactive 1 . 9260749 9462279 0,0,0 +chr3R 9462279 9471484 active 4 . 9462279 9471484 255,255,153 +chr3R 9471484 9485558 active 4 . 9471484 9485558 255,255,153 +chr3R 9485558 9500949 active 2 . 9485558 9500949 255,255,153 +chr3R 9500949 9509311 active 4 . 9500949 9509311 255,255,153 +chr3R 9509311 9525598 active 4 . 9509311 9525598 255,255,153 +chr3R 9525598 9538881 inactive 1 . 9525598 9538881 0,0,0 +chr3R 9538881 9598941 inactive 1 . 9538881 9598941 0,0,0 +chr3R 9598941 9606513 active 2 . 9598941 9606513 255,255,153 +chr3R 9606513 9646765 inactive 1 . 9606513 9646765 0,0,0 +chr3R 9646765 9660074 inactive 1 . 9646765 9660074 0,0,0 +chr3R 9660074 9666222 active 4 . 9660074 9666222 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11114287 11146120 active 2 . 11114287 11146120 255,255,153 +chr3R 11146120 11155992 active 4 . 11146120 11155992 255,255,153 +chr3R 11155992 11198135 active 4 . 11155992 11198135 255,255,153 +chr3R 11198135 11236005 inactive 1 . 11198135 11236005 0,0,0 +chr3R 11236005 11263983 inactive 1 . 11236005 11263983 0,0,0 +chr3R 11263983 11311649 inactive 1 . 11263983 11311649 0,0,0 +chr3R 11311649 11362361 inactive 1 . 11311649 11362361 0,0,0 +chr3R 11362361 11374448 active 2 . 11362361 11374448 255,255,153 +chr3R 11374448 11612083 inactive 1 . 11374448 11612083 0,0,0 +chr3R 11612083 11619591 active 4 . 11612083 11619591 255,255,153 +chr3R 11619591 11630135 active 4 . 11619591 11630135 255,255,153 +chr3R 11630135 11662690 active 2 . 11630135 11662690 255,255,153 +chr3R 11662690 11683291 active 4 . 11662690 11683291 255,255,153 +chr3R 11683291 11791605 inactive 1 . 11683291 11791605 0,0,0 +chr3R 11791605 11799138 active 4 . 11791605 11799138 255,255,153 +chr3R 11799138 11830125 active 2 . 11799138 11830125 255,255,153 +chr3R 11830125 11866929 PcG 0 . 11830125 11866929 56,108,176 +chr3R 11866929 11876701 active 2 . 11866929 11876701 255,255,153 +chr3R 11876701 11924684 active 2 . 11876701 11924684 255,255,153 +chr3R 11924684 11984641 inactive 1 . 11924684 11984641 0,0,0 +chr3R 11984641 12012560 inactive 1 . 11984641 12012560 0,0,0 +chr3R 12012560 12031790 active 2 . 12012560 12031790 255,255,153 +chr3R 12031790 12086491 active 2 . 12031790 12086491 255,255,153 +chr3R 12086491 12144946 active 2 . 12086491 12144946 255,255,153 +chr3R 12144946 12176991 inactive 1 . 12144946 12176991 0,0,0 +chr3R 12176991 12184985 active 2 . 12176991 12184985 255,255,153 +chr3R 12184985 12257516 PcG 0 . 12184985 12257516 56,108,176 +chr3R 12257516 12281799 active 4 . 12257516 12281799 255,255,153 +chr3R 12281799 12295087 active 4 . 12281799 12295087 255,255,153 +chr3R 12295087 12310854 active 4 . 12295087 12310854 255,255,153 +chr3R 12310854 12323388 inactive 1 . 12310854 12323388 0,0,0 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13228266 255,255,153 +chr3R 13228266 13356825 inactive 1 . 13228266 13356825 0,0,0 +chr3R 13356825 13372715 active 4 . 13356825 13372715 255,255,153 +chr3R 13372715 13432245 inactive 1 . 13372715 13432245 0,0,0 +chr3R 13432245 13441653 inactive 1 . 13432245 13441653 0,0,0 +chr3R 13441653 13473149 inactive 1 . 13441653 13473149 0,0,0 +chr3R 13473149 13496950 inactive 1 . 13473149 13496950 0,0,0 +chr3R 13496950 13508499 active 4 . 13496950 13508499 255,255,153 +chr3R 13508499 13544002 active 2 . 13508499 13544002 255,255,153 +chr3R 13544002 13620279 inactive 1 . 13544002 13620279 0,0,0 +chr3R 13620279 13637006 active 4 . 13620279 13637006 255,255,153 +chr3R 13637006 13847191 inactive 1 . 13637006 13847191 0,0,0 +chr3R 13847191 13990022 inactive 1 . 13847191 13990022 0,0,0 +chr3R 13990022 14015092 active 4 . 13990022 14015092 255,255,153 +chr3R 14015092 14025024 active 2 . 14015092 14025024 255,255,153 +chr3R 14025024 14052188 active 2 . 14025024 14052188 255,255,153 +chr3R 14052188 14069618 inactive 1 . 14052188 14069618 0,0,0 +chr3R 14069618 14100581 active 2 . 14069618 14100581 255,255,153 +chr3R 14100581 14109390 active 2 . 14100581 14109390 255,255,153 +chr3R 14109390 14124380 active 4 . 14109390 14124380 255,255,153 +chr3R 14124380 14191312 inactive 1 . 14124380 14191312 0,0,0 +chr3R 14191312 14225086 inactive 1 . 14191312 14225086 0,0,0 +chr3R 14225086 14239002 active 4 . 14225086 14239002 255,255,153 +chr3R 14239002 14330526 inactive 1 . 14239002 14330526 0,0,0 +chr3R 14330526 14399262 inactive 1 . 14330526 14399262 0,0,0 +chr3R 14399262 14411648 active 2 . 14399262 14411648 255,255,153 +chr3R 14411648 14485345 inactive 1 . 14411648 14485345 0,0,0 +chr3R 14485345 14503416 active 4 . 14485345 14503416 255,255,153 +chr3R 14503416 14557469 inactive 1 . 14503416 14557469 0,0,0 +chr3R 14557469 14569021 active 4 . 14557469 14569021 255,255,153 +chr3R 14569021 14585410 active 4 . 14569021 14585410 255,255,153 +chr3R 14585410 14732090 inactive 1 . 14585410 14732090 0,0,0 +chr3R 14732090 14756297 active 2 . 14732090 14756297 255,255,153 +chr3R 14756297 14809735 inactive 1 . 14756297 14809735 0,0,0 +chr3R 14809735 14856775 inactive 1 . 14809735 14856775 0,0,0 +chr3R 14856775 14922213 inactive 1 . 14856775 14922213 0,0,0 +chr3R 14922213 14973918 inactive 1 . 14922213 14973918 0,0,0 +chr3R 14973918 14983018 active 2 . 14973918 14983018 255,255,153 +chr3R 14983018 14988287 active 2 . 14983018 14988287 255,255,153 +chr3R 14988287 15006189 inactive 1 . 14988287 15006189 0,0,0 +chr3R 15006189 15049031 inactive 1 . 15006189 15049031 0,0,0 +chr3R 15049031 15239068 inactive 1 . 15049031 15239068 0,0,0 +chr3R 15239068 15394190 inactive 1 . 15239068 15394190 0,0,0 +chr3R 15394190 15468302 active 2 . 15394190 15468302 255,255,153 +chr3R 15468302 15497210 active 2 . 15468302 15497210 255,255,153 +chr3R 15497210 15616620 inactive 1 . 15497210 15616620 0,0,0 +chr3R 15616620 15673602 inactive 1 . 15616620 15673602 0,0,0 +chr3R 15673602 15690545 active 4 . 15673602 15690545 255,255,153 +chr3R 15690545 15703190 active 2 . 15690545 15703190 255,255,153 +chr3R 15703190 15715651 active 4 . 15703190 15715651 255,255,153 +chr3R 15715651 15731057 active 2 . 15715651 15731057 255,255,153 +chr3R 15731057 15833656 inactive 1 . 15731057 15833656 0,0,0 +chr3R 15833656 15862304 active 4 . 15833656 15862304 255,255,153 +chr3R 15862304 15884657 inactive 1 . 15862304 15884657 0,0,0 +chr3R 15884657 16080047 inactive 1 . 15884657 16080047 0,0,0 +chr3R 16080047 16135788 active 2 . 16080047 16135788 255,255,153 +chr3R 16135788 16155181 active 2 . 16135788 16155181 255,255,153 +chr3R 16155181 16290676 inactive 1 . 16155181 16290676 0,0,0 +chr3R 16290676 16359808 inactive 1 . 16290676 16359808 0,0,0 +chr3R 16359808 16382991 active 2 . 16359808 16382991 255,255,153 +chr3R 16382991 16405677 active 2 . 16382991 16405677 255,255,153 +chr3R 16405677 16413523 active 4 . 16405677 16413523 255,255,153 +chr3R 16413523 16419138 active 4 . 16413523 16419138 255,255,153 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. 16937106 16955857 255,255,153 +chr3R 16955857 16978146 active 4 . 16955857 16978146 255,255,153 +chr3R 16978146 17011391 active 2 . 16978146 17011391 255,255,153 +chr3R 17011391 17029675 active 2 . 17011391 17029675 255,255,153 +chr3R 17029675 17049455 active 4 . 17029675 17049455 255,255,153 +chr3R 17049455 17121788 active 2 . 17049455 17121788 255,255,153 +chr3R 17121788 17175939 inactive 1 . 17121788 17175939 0,0,0 +chr3R 17175939 17203771 active 4 . 17175939 17203771 255,255,153 +chr3R 17203771 17234368 PcG 0 . 17203771 17234368 56,108,176 +chr3R 17234368 17307178 PcG 0 . 17234368 17307178 56,108,176 +chr3R 17307178 17313875 active 4 . 17307178 17313875 255,255,153 +chr3R 17313875 17346131 PcG 0 . 17313875 17346131 56,108,176 +chr3R 17346131 17406285 PcG 0 . 17346131 17406285 56,108,176 +chr3R 17406285 17417345 active 2 . 17406285 17417345 255,255,153 +chr3R 17417345 17446030 active 2 . 17417345 17446030 255,255,153 +chr3R 17446030 17489007 active 2 . 17446030 17489007 255,255,153 +chr3R 17489007 17497791 active 4 . 17489007 17497791 255,255,153 +chr3R 17497791 17586766 inactive 1 . 17497791 17586766 0,0,0 +chr3R 17586766 17603766 active 4 . 17586766 17603766 255,255,153 +chr3R 17603766 17648053 inactive 1 . 17603766 17648053 0,0,0 +chr3R 17648053 17690321 active 2 . 17648053 17690321 255,255,153 +chr3R 17690321 17704521 active 2 . 17690321 17704521 255,255,153 +chr3R 17704521 17715081 inactive 1 . 17704521 17715081 0,0,0 +chr3R 17715081 17844422 inactive 1 . 17715081 17844422 0,0,0 +chr3R 17844422 17868831 active 4 . 17844422 17868831 255,255,153 +chr3R 17868831 17920059 inactive 1 . 17868831 17920059 0,0,0 +chr3R 17920059 18181640 inactive 1 . 17920059 18181640 0,0,0 +chr3R 18181640 18273325 active 2 . 18181640 18273325 255,255,153 +chr3R 18273325 18294124 active 2 . 18273325 18294124 255,255,153 +chr3R 18294124 18312533 inactive 1 . 18294124 18312533 0,0,0 +chr3R 18312533 18354557 inactive 1 . 18312533 18354557 0,0,0 +chr3R 18354557 18373676 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255,255,153 +chr3R 19016213 19047624 active 2 . 19016213 19047624 255,255,153 +chr3R 19047624 19077410 inactive 1 . 19047624 19077410 0,0,0 +chr3R 19077410 19106718 active 2 . 19077410 19106718 255,255,153 +chr3R 19106718 19119314 active 4 . 19106718 19119314 255,255,153 +chr3R 19119314 19159973 active 2 . 19119314 19159973 255,255,153 +chr3R 19159973 19173210 active 2 . 19159973 19173210 255,255,153 +chr3R 19173210 19184571 active 4 . 19173210 19184571 255,255,153 +chr3R 19184571 19366313 inactive 1 . 19184571 19366313 0,0,0 +chr3R 19366313 19426592 inactive 1 . 19366313 19426592 0,0,0 +chr3R 19426592 19505344 inactive 1 . 19426592 19505344 0,0,0 +chr3R 19505344 19521251 active 4 . 19505344 19521251 255,255,153 +chr3R 19521251 19547993 inactive 1 . 19521251 19547993 0,0,0 +chr3R 19547993 19559024 active 2 . 19547993 19559024 255,255,153 +chr3R 19559024 19578559 inactive 1 . 19559024 19578559 0,0,0 +chr3R 19578559 19584234 active 4 . 19578559 19584234 255,255,153 +chr3R 19584234 19607560 active 4 . 19584234 19607560 255,255,153 +chr3R 19607560 19645000 active 4 . 19607560 19645000 255,255,153 +chr3R 19645000 19717043 active 2 . 19645000 19717043 255,255,153 +chr3R 19717043 19748454 active 2 . 19717043 19748454 255,255,153 +chr3R 19748454 19769110 active 4 . 19748454 19769110 255,255,153 +chr3R 19769110 19783980 active 2 . 19769110 19783980 255,255,153 +chr3R 19783980 19821667 active 2 . 19783980 19821667 255,255,153 +chr3R 19821667 19839205 active 2 . 19821667 19839205 255,255,153 +chr3R 19839205 19857520 active 2 . 19839205 19857520 255,255,153 +chr3R 19857520 19872960 active 4 . 19857520 19872960 255,255,153 +chr3R 19872960 19883370 active 4 . 19872960 19883370 255,255,153 +chr3R 19883370 19931850 active 2 . 19883370 19931850 255,255,153 +chr3R 19931850 19978451 active 2 . 19931850 19978451 255,255,153 +chr3R 19978451 19995515 active 4 . 19978451 19995515 255,255,153 +chr3R 19995515 20013094 inactive 1 . 19995515 20013094 0,0,0 +chr3R 20013094 20047850 active 2 . 20013094 20047850 255,255,153 +chr3R 20047850 20055960 active 4 . 20047850 20055960 255,255,153 +chr3R 20055960 20078542 active 4 . 20055960 20078542 255,255,153 +chr3R 20078542 20101886 active 2 . 20078542 20101886 255,255,153 +chr3R 20101886 20116034 active 2 . 20101886 20116034 255,255,153 +chr3R 20116034 20145042 active 2 . 20116034 20145042 255,255,153 +chr3R 20145042 20159135 active 4 . 20145042 20159135 255,255,153 +chr3R 20159135 20186066 active 4 . 20159135 20186066 255,255,153 +chr3R 20186066 20353625 inactive 1 . 20186066 20353625 0,0,0 +chr3R 20353625 20370624 active 4 . 20353625 20370624 255,255,153 +chr3R 20370624 20382909 active 2 . 20370624 20382909 255,255,153 +chr3R 20382909 20412250 active 2 . 20382909 20412250 255,255,153 +chr3R 20412250 20451544 active 2 . 20412250 20451544 255,255,153 +chr3R 20451544 20476824 active 4 . 20451544 20476824 255,255,153 +chr3R 20476824 20488460 active 4 . 20476824 20488460 255,255,153 +chr3R 20488460 20579623 inactive 1 . 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22771092 22783478 255,255,153 +chr3R 22783478 22814372 active 2 . 22783478 22814372 255,255,153 +chr3R 22814372 22938042 inactive 1 . 22814372 22938042 0,0,0 +chr3R 22938042 22977583 active 2 . 22938042 22977583 255,255,153 +chr3R 22977583 22991312 active 2 . 22977583 22991312 255,255,153 +chr3R 22991312 23054657 inactive 1 . 22991312 23054657 0,0,0 +chr3R 23054657 23064711 active 2 . 23054657 23064711 255,255,153 +chr3R 23064711 23071118 active 4 . 23064711 23071118 255,255,153 +chr3R 23071118 23107622 active 4 . 23071118 23107622 255,255,153 +chr3R 23107622 23119980 active 4 . 23107622 23119980 255,255,153 +chr3R 23119980 23373334 inactive 1 . 23119980 23373334 0,0,0 +chr3R 23373334 23384500 active 2 . 23373334 23384500 255,255,153 +chr3R 23384500 23406737 active 2 . 23384500 23406737 255,255,153 +chr3R 23406737 23433702 inactive 1 . 23406737 23433702 0,0,0 +chr3R 23433702 23502747 inactive 1 . 23433702 23502747 0,0,0 +chr3R 23502747 23526431 active 2 . 23502747 23526431 255,255,153 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25882618 25945169 active 2 . 25882618 25945169 255,255,153 +chr3R 25945169 25960314 inactive 1 . 25945169 25960314 0,0,0 +chr3R 25960314 26035018 inactive 1 . 25960314 26035018 0,0,0 +chr3R 26035018 26074286 inactive 1 . 26035018 26074286 0,0,0 +chr3R 26074286 26251017 active 2 . 26074286 26251017 255,255,153 +chr3R 26251017 26292594 active 2 . 26251017 26292594 255,255,153 +chr3R 26292594 26388775 inactive 1 . 26292594 26388775 0,0,0 +chr3R 26388775 26427485 active 2 . 26388775 26427485 255,255,153 +chr3R 26427485 26591261 inactive 1 . 26427485 26591261 0,0,0 +chr3R 26591261 26621490 active 2 . 26591261 26621490 255,255,153 +chr3R 26621490 26634492 active 2 . 26621490 26634492 255,255,153 +chr3R 26634492 26652755 active 2 . 26634492 26652755 255,255,153 +chr3R 26652755 26714543 inactive 1 . 26652755 26714543 0,0,0 +chr3R 26714543 26771657 PcG 0 . 26714543 26771657 56,108,176 +chr3R 26771657 26887520 inactive 1 . 26771657 26887520 0,0,0 +chr3R 26887520 27022296 inactive 1 . 26887520 27022296 0,0,0 +chr3R 27022296 27045902 active 4 . 27022296 27045902 255,255,153 +chr3R 27045902 27076198 inactive 1 . 27045902 27076198 0,0,0 +chr3R 27076198 27089700 inactive 1 . 27076198 27089700 0,0,0 +chr3R 27089700 27203704 inactive 1 . 27089700 27203704 0,0,0 +chr3R 27203704 27230951 active 2 . 27203704 27230951 255,255,153 +chr3R 27230951 27283920 active 2 . 27230951 27283920 255,255,153 +chr3R 27283920 27288859 active 4 . 27283920 27288859 255,255,153 +chr3R 27288859 27397532 inactive 1 . 27288859 27397532 0,0,0 +chr3R 27397532 27422203 active 4 . 27397532 27422203 255,255,153 +chr3R 27422203 27444373 active 2 . 27422203 27444373 255,255,153 +chr3R 27444373 27494937 inactive 1 . 27444373 27494937 0,0,0 +chr3R 27494937 27552545 active 2 . 27494937 27552545 255,255,153 +chr3R 27552545 27569324 active 4 . 27552545 27569324 255,255,153 +chr3R 27569324 27597976 active 2 . 27569324 27597976 255,255,153 +chr3R 27597976 27638204 active 4 . 27597976 27638204 255,255,153 +chr3R 27638204 27815358 inactive 1 . 27638204 27815358 0,0,0 +chr3R 27815358 27875667 inactive 1 . 27815358 27875667 0,0,0 +chr3R 27875667 27898386 active 2 . 27875667 27898386 255,255,153 +chr4 89639 153693 HP1 3 . 89639 153693 51,160,44 +chr4 153693 199930 HP1 3 . 153693 199930 51,160,44 +chr4 199930 232385 HP1 3 . 199930 232385 51,160,44 +chr4 232385 328258 HP1 3 . 232385 328258 51,160,44 +chr4 328258 381200 HP1 3 . 328258 381200 51,160,44 +chr4 381200 454648 active 2 . 381200 454648 255,255,153 +chr4 454648 464783 HP1 3 . 454648 464783 51,160,44 +chr4 464783 506831 HP1 3 . 464783 506831 51,160,44 +chr4 506831 541548 inactive 1 . 506831 541548 0,0,0 +chr4 541548 577021 HP1 3 . 541548 577021 51,160,44 +chr4 577021 592698 HP1 3 . 577021 592698 51,160,44 +chr4 592698 631317 HP1 3 . 592698 631317 51,160,44 +chr4 631317 680922 HP1 3 . 631317 680922 51,160,44 +chr4 680922 717334 HP1 3 . 680922 717334 51,160,44 +chr4 717334 819091 inactive 1 . 717334 819091 0,0,0 +chr4 819091 856570 inactive 1 . 819091 856570 0,0,0 +chr4 856570 873694 inactive 1 . 856570 873694 0,0,0 +chr4 873694 887552 HP1 3 . 873694 887552 51,160,44 +chr4 887552 950322 HP1 3 . 887552 950322 51,160,44 +chr4 950322 978914 HP1 3 . 950322 978914 51,160,44 +chr4 978914 1000704 HP1 3 . 978914 1000704 51,160,44 +chr4 1000704 1048113 HP1 3 . 1000704 1048113 51,160,44 +chr4 1048113 1081769 HP1 3 . 1048113 1081769 51,160,44 +chr4 1081769 1133778 inactive 1 . 1081769 1133778 0,0,0 +chr4 1133778 1166366 HP1 3 . 1133778 1166366 51,160,44 +chr4 1166366 1202542 HP1 3 . 1166366 1202542 51,160,44 +chr4 1202542 1222032 HP1 3 . 1202542 1222032 51,160,44 +chr4 1222032 1234415 HP1 3 . 1222032 1234415 51,160,44 +chr4 1234415 1282423 HP1 3 . 1234415 1282423 51,160,44 +chrX 73624 98011 inactive 1 . 73624 98011 0,0,0 +chrX 98011 163162 active 4 . 98011 163162 255,255,153 +chrX 163162 173032 active 4 . 163162 173032 255,255,153 +chrX 173032 245055 inactive 1 . 173032 245055 0,0,0 +chrX 245055 256176 inactive 1 . 245055 256176 0,0,0 +chrX 256176 370742 inactive 1 . 256176 370742 0,0,0 +chrX 370742 387797 active 4 . 370742 387797 255,255,153 +chrX 387797 425626 active 2 . 387797 425626 255,255,153 +chrX 425626 511958 inactive 1 . 425626 511958 0,0,0 +chrX 511958 549785 active 4 . 511958 549785 255,255,153 +chrX 549785 653272 inactive 1 . 549785 653272 0,0,0 +chrX 653272 659365 active 2 . 653272 659365 255,255,153 +chrX 659365 695160 inactive 1 . 659365 695160 0,0,0 +chrX 695160 762046 inactive 1 . 695160 762046 0,0,0 +chrX 762046 811178 inactive 1 . 762046 811178 0,0,0 +chrX 811178 835720 active 2 . 811178 835720 255,255,153 +chrX 835720 920690 inactive 1 . 835720 920690 0,0,0 +chrX 920690 950857 active 2 . 920690 950857 255,255,153 +chrX 950857 1129676 inactive 1 . 950857 1129676 0,0,0 +chrX 1129676 1182377 active 2 . 1129676 1182377 255,255,153 +chrX 1182377 1215679 inactive 1 . 1182377 1215679 0,0,0 +chrX 1215679 1235538 inactive 1 . 1215679 1235538 0,0,0 +chrX 1235538 1269714 active 4 . 1235538 1269714 255,255,153 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1904345 56,108,176 +chrX 1904345 1935891 active 4 . 1904345 1935891 255,255,153 +chrX 1935891 1965737 active 2 . 1935891 1965737 255,255,153 +chrX 1965737 1988470 active 2 . 1965737 1988470 255,255,153 +chrX 1988470 2015677 active 2 . 1988470 2015677 255,255,153 +chrX 2015677 2039288 active 2 . 2015677 2039288 255,255,153 +chrX 2039288 2053111 active 4 . 2039288 2053111 255,255,153 +chrX 2053111 2066003 active 2 . 2053111 2066003 255,255,153 +chrX 2066003 2116316 active 2 . 2066003 2116316 255,255,153 +chrX 2116316 2136020 active 4 . 2116316 2136020 255,255,153 +chrX 2136020 2164365 active 4 . 2136020 2164365 255,255,153 +chrX 2164365 2169170 active 4 . 2164365 2169170 255,255,153 +chrX 2169170 2179239 active 2 . 2169170 2179239 255,255,153 +chrX 2179239 2234701 active 2 . 2179239 2234701 255,255,153 +chrX 2234701 2238520 active 4 . 2234701 2238520 255,255,153 +chrX 2238520 2280041 inactive 1 . 2238520 2280041 0,0,0 +chrX 2280041 2318567 inactive 1 . 2280041 2318567 0,0,0 +chrX 2318567 2338007 inactive 1 . 2318567 2338007 0,0,0 +chrX 2338007 2477307 inactive 1 . 2338007 2477307 0,0,0 +chrX 2477307 2508070 active 2 . 2477307 2508070 255,255,153 +chrX 2508070 2528894 active 4 . 2508070 2528894 255,255,153 +chrX 2528894 2557128 active 2 . 2528894 2557128 255,255,153 +chrX 2557128 2574187 active 2 . 2557128 2574187 255,255,153 +chrX 2574187 2639288 active 4 . 2574187 2639288 255,255,153 +chrX 2639288 2843956 inactive 1 . 2639288 2843956 0,0,0 +chrX 2843956 3012393 inactive 1 . 2843956 3012393 0,0,0 +chrX 3012393 3028382 inactive 1 . 3012393 3028382 0,0,0 +chrX 3028382 3038021 active 2 . 3028382 3038021 255,255,153 +chrX 3038021 3056842 active 2 . 3038021 3056842 255,255,153 +chrX 3056842 3068761 inactive 1 . 3056842 3068761 0,0,0 +chrX 3068761 3180958 inactive 1 . 3068761 3180958 0,0,0 +chrX 3180958 3234519 inactive 1 . 3180958 3234519 0,0,0 +chrX 3234519 3347722 active 2 . 3234519 3347722 255,255,153 +chrX 3347722 3375024 inactive 1 . 3347722 3375024 0,0,0 +chrX 3375024 3468196 inactive 1 . 3375024 3468196 0,0,0 +chrX 3468196 3567199 inactive 1 . 3468196 3567199 0,0,0 +chrX 3567199 3614050 active 2 . 3567199 3614050 255,255,153 +chrX 3614050 3684032 active 2 . 3614050 3684032 255,255,153 +chrX 3684032 3830135 inactive 1 . 3684032 3830135 0,0,0 +chrX 3830135 3862608 active 4 . 3830135 3862608 255,255,153 +chrX 3862608 4000177 inactive 1 . 3862608 4000177 0,0,0 +chrX 4000177 4010259 active 4 . 4000177 4010259 255,255,153 +chrX 4010259 4026976 active 4 . 4010259 4026976 255,255,153 +chrX 4026976 4108703 inactive 1 . 4026976 4108703 0,0,0 +chrX 4108703 4216986 inactive 1 . 4108703 4216986 0,0,0 +chrX 4216986 4260510 active 2 . 4216986 4260510 255,255,153 +chrX 4260510 4289748 inactive 1 . 4260510 4289748 0,0,0 +chrX 4289748 4424718 PcG 0 . 4289748 4424718 56,108,176 +chrX 4424718 4449004 active 4 . 4424718 4449004 255,255,153 +chrX 4449004 4512996 PcG 0 . 4449004 4512996 56,108,176 +chrX 4512996 4542056 inactive 1 . 4512996 4542056 0,0,0 +chrX 4542056 4573915 active 2 . 4542056 4573915 255,255,153 +chrX 4573915 4581190 active 4 . 4573915 4581190 255,255,153 +chrX 4581190 4607414 active 2 . 4581190 4607414 255,255,153 +chrX 4607414 4798181 inactive 1 . 4607414 4798181 0,0,0 +chrX 4798181 4827635 active 2 . 4798181 4827635 255,255,153 +chrX 4827635 4850529 active 2 . 4827635 4850529 255,255,153 +chrX 4850529 4978664 inactive 1 . 4850529 4978664 0,0,0 +chrX 4978664 5182813 inactive 1 . 4978664 5182813 0,0,0 +chrX 5182813 5203253 inactive 1 . 5182813 5203253 0,0,0 +chrX 5203253 5211457 inactive 1 . 5203253 5211457 0,0,0 +chrX 5211457 5217122 active 4 . 5211457 5217122 255,255,153 +chrX 5217122 5226945 active 4 . 5217122 5226945 255,255,153 +chrX 5226945 5309139 inactive 1 . 5226945 5309139 0,0,0 +chrX 5309139 5327103 active 2 . 5309139 5327103 255,255,153 +chrX 5327103 5422774 inactive 1 . 5327103 5422774 0,0,0 +chrX 5422774 5507068 PcG 0 . 5422774 5507068 56,108,176 +chrX 5507068 5559716 inactive 1 . 5507068 5559716 0,0,0 +chrX 5559716 5573379 active 4 . 5559716 5573379 255,255,153 +chrX 5573379 5591096 active 2 . 5573379 5591096 255,255,153 +chrX 5591096 5602209 active 2 . 5591096 5602209 255,255,153 +chrX 5602209 5631662 active 2 . 5602209 5631662 255,255,153 +chrX 5631662 5641292 active 4 . 5631662 5641292 255,255,153 +chrX 5641292 5658544 active 4 . 5641292 5658544 255,255,153 +chrX 5658544 5767856 inactive 1 . 5658544 5767856 0,0,0 +chrX 5767856 5774643 active 4 . 5767856 5774643 255,255,153 +chrX 5774643 5811955 active 2 . 5774643 5811955 255,255,153 +chrX 5811955 5860428 active 2 . 5811955 5860428 255,255,153 +chrX 5860428 5931391 inactive 1 . 5860428 5931391 0,0,0 +chrX 5931391 6113945 inactive 1 . 5931391 6113945 0,0,0 +chrX 6113945 6118731 active 2 . 6113945 6118731 255,255,153 +chrX 6118731 6161560 active 4 . 6118731 6161560 255,255,153 +chrX 6161560 6171748 active 4 . 6161560 6171748 255,255,153 +chrX 6171748 6181885 active 2 . 6171748 6181885 255,255,153 +chrX 6181885 6195482 active 4 . 6181885 6195482 255,255,153 +chrX 6195482 6241215 inactive 1 . 6195482 6241215 0,0,0 +chrX 6241215 6267347 active 2 . 6241215 6267347 255,255,153 +chrX 6267347 6418112 inactive 1 . 6267347 6418112 0,0,0 +chrX 6418112 6427767 active 4 . 6418112 6427767 255,255,153 +chrX 6427767 6484971 inactive 1 . 6427767 6484971 0,0,0 +chrX 6484971 6493988 active 4 . 6484971 6493988 255,255,153 +chrX 6493988 6551128 active 2 . 6493988 6551128 255,255,153 +chrX 6551128 6568439 active 4 . 6551128 6568439 255,255,153 +chrX 6568439 6589488 active 4 . 6568439 6589488 255,255,153 +chrX 6589488 6637776 active 2 . 6589488 6637776 255,255,153 +chrX 6637776 6651410 inactive 1 . 6637776 6651410 0,0,0 +chrX 6651410 6671529 active 4 . 6651410 6671529 255,255,153 +chrX 6671529 6697552 active 2 . 6671529 6697552 255,255,153 +chrX 6697552 6714869 active 4 . 6697552 6714869 255,255,153 +chrX 6714869 6738135 active 4 . 6714869 6738135 255,255,153 +chrX 6738135 6745066 active 4 . 6738135 6745066 255,255,153 +chrX 6745066 6781167 active 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7803056 active 4 . 7783023 7803056 255,255,153 +chrX 7803056 7827564 active 4 . 7803056 7827564 255,255,153 +chrX 7827564 7839720 active 4 . 7827564 7839720 255,255,153 +chrX 7839720 7862386 active 4 . 7839720 7862386 255,255,153 +chrX 7862386 7922585 inactive 1 . 7862386 7922585 0,0,0 +chrX 7922585 7955380 active 2 . 7922585 7955380 255,255,153 +chrX 7955380 7969470 active 4 . 7955380 7969470 255,255,153 +chrX 7969470 7986564 active 2 . 7969470 7986564 255,255,153 +chrX 7986564 8010201 active 2 . 7986564 8010201 255,255,153 +chrX 8010201 8035947 active 2 . 8010201 8035947 255,255,153 +chrX 8035947 8072066 active 4 . 8035947 8072066 255,255,153 +chrX 8072066 8134475 inactive 1 . 8072066 8134475 0,0,0 +chrX 8134475 8146098 active 4 . 8134475 8146098 255,255,153 +chrX 8146098 8167415 active 2 . 8146098 8167415 255,255,153 +chrX 8167415 8292065 inactive 1 . 8167415 8292065 0,0,0 +chrX 8292065 8301690 active 4 . 8292065 8301690 255,255,153 +chrX 8301690 8331594 active 4 . 8301690 8331594 255,255,153 +chrX 8331594 8355436 active 2 . 8331594 8355436 255,255,153 +chrX 8355436 8372653 active 2 . 8355436 8372653 255,255,153 +chrX 8372653 8412017 inactive 1 . 8372653 8412017 0,0,0 +chrX 8412017 8456076 inactive 1 . 8412017 8456076 0,0,0 +chrX 8456076 8468249 active 2 . 8456076 8468249 255,255,153 +chrX 8468249 8482308 active 2 . 8468249 8482308 255,255,153 +chrX 8482308 8500550 active 4 . 8482308 8500550 255,255,153 +chrX 8500550 8570691 PcG 0 . 8500550 8570691 56,108,176 +chrX 8570691 8603058 active 2 . 8570691 8603058 255,255,153 +chrX 8603058 8616018 active 4 . 8603058 8616018 255,255,153 +chrX 8616018 8767164 PcG 0 . 8616018 8767164 56,108,176 +chrX 8767164 8800658 active 2 . 8767164 8800658 255,255,153 +chrX 8800658 8923817 inactive 1 . 8800658 8923817 0,0,0 +chrX 8923817 8935131 inactive 1 . 8923817 8935131 0,0,0 +chrX 8935131 8982242 active 2 . 8935131 8982242 255,255,153 +chrX 8982242 9004118 active 4 . 8982242 9004118 255,255,153 +chrX 9004118 9036041 active 2 . 9004118 9036041 255,255,153 +chrX 9036041 9049978 active 4 . 9036041 9049978 255,255,153 +chrX 9049978 9058809 active 4 . 9049978 9058809 255,255,153 +chrX 9058809 9086522 active 2 . 9058809 9086522 255,255,153 +chrX 9086522 9095497 active 2 . 9086522 9095497 255,255,153 +chrX 9095497 9126461 inactive 1 . 9095497 9126461 0,0,0 +chrX 9126461 9144390 active 4 . 9126461 9144390 255,255,153 +chrX 9144390 9178145 active 2 . 9144390 9178145 255,255,153 +chrX 9178145 9212853 PcG 0 . 9178145 9212853 56,108,176 +chrX 9212853 9250607 active 2 . 9212853 9250607 255,255,153 +chrX 9250607 9448400 inactive 1 . 9250607 9448400 0,0,0 +chrX 9448400 9475684 active 4 . 9448400 9475684 255,255,153 +chrX 9475684 9494749 active 2 . 9475684 9494749 255,255,153 +chrX 9494749 9552400 active 2 . 9494749 9552400 255,255,153 +chrX 9552400 9582131 active 2 . 9552400 9582131 255,255,153 +chrX 9582131 9784732 inactive 1 . 9582131 9784732 0,0,0 +chrX 9784732 9981467 inactive 1 . 9784732 9981467 0,0,0 +chrX 9981467 10106058 inactive 1 . 9981467 10106058 0,0,0 +chrX 10106058 10113932 active 2 . 10106058 10113932 255,255,153 +chrX 10113932 10144869 inactive 1 . 10113932 10144869 0,0,0 +chrX 10144869 10155355 inactive 1 . 10144869 10155355 0,0,0 +chrX 10155355 10212879 active 2 . 10155355 10212879 255,255,153 +chrX 10212879 10220183 active 2 . 10212879 10220183 255,255,153 +chrX 10220183 10224692 active 4 . 10220183 10224692 255,255,153 +chrX 10224692 10259519 active 2 . 10224692 10259519 255,255,153 +chrX 10259519 10279827 active 2 . 10259519 10279827 255,255,153 +chrX 10279827 10354999 inactive 1 . 10279827 10354999 0,0,0 +chrX 10354999 10373033 active 4 . 10354999 10373033 255,255,153 +chrX 10373033 10489530 active 2 . 10373033 10489530 255,255,153 +chrX 10489530 10496363 active 2 . 10489530 10496363 255,255,153 +chrX 10496363 10639240 inactive 1 . 10496363 10639240 0,0,0 +chrX 10639240 10661406 active 2 . 10639240 10661406 255,255,153 +chrX 10661406 10680871 active 2 . 10661406 10680871 255,255,153 +chrX 10680871 10700864 active 2 . 10680871 10700864 255,255,153 +chrX 10700864 10709657 active 2 . 10700864 10709657 255,255,153 +chrX 10709657 10726289 PcG 0 . 10709657 10726289 56,108,176 +chrX 10726289 10740685 active 2 . 10726289 10740685 255,255,153 +chrX 10740685 10752252 active 4 . 10740685 10752252 255,255,153 +chrX 10752252 10771869 active 4 . 10752252 10771869 255,255,153 +chrX 10771869 10788931 inactive 1 . 10771869 10788931 0,0,0 +chrX 10788931 10794208 active 4 . 10788931 10794208 255,255,153 +chrX 10794208 10984173 inactive 1 . 10794208 10984173 0,0,0 +chrX 10984173 11003915 active 2 . 10984173 11003915 255,255,153 +chrX 11003915 11036976 active 4 . 11003915 11036976 255,255,153 +chrX 11036976 11042327 active 4 . 11036976 11042327 255,255,153 +chrX 11042327 11048997 active 4 . 11042327 11048997 255,255,153 +chrX 11048997 11094625 inactive 1 . 11048997 11094625 0,0,0 +chrX 11094625 11163287 inactive 1 . 11094625 11163287 0,0,0 +chrX 11163287 11219074 inactive 1 . 11163287 11219074 0,0,0 +chrX 11219074 11233912 active 4 . 11219074 11233912 255,255,153 +chrX 11233912 11244519 active 4 . 11233912 11244519 255,255,153 +chrX 11244519 11253004 active 4 . 11244519 11253004 255,255,153 +chrX 11253004 11262850 active 4 . 11253004 11262850 255,255,153 +chrX 11262850 11283365 inactive 1 . 11262850 11283365 0,0,0 +chrX 11283365 11313180 active 2 . 11283365 11313180 255,255,153 +chrX 11313180 11328006 active 2 . 11313180 11328006 255,255,153 +chrX 11328006 11348468 active 2 . 11328006 11348468 255,255,153 +chrX 11348468 11353468 active 4 . 11348468 11353468 255,255,153 +chrX 11353468 11382849 inactive 1 . 11353468 11382849 0,0,0 +chrX 11382849 11453462 active 2 . 11382849 11453462 255,255,153 +chrX 11453462 11474675 active 4 . 11453462 11474675 255,255,153 +chrX 11474675 11493952 active 2 . 11474675 11493952 255,255,153 +chrX 11493952 11516124 active 4 . 11493952 11516124 255,255,153 +chrX 11516124 11574024 active 2 . 11516124 11574024 255,255,153 +chrX 11574024 11588893 active 2 . 11574024 11588893 255,255,153 +chrX 11588893 11610689 active 4 . 11588893 11610689 255,255,153 +chrX 11610689 11686527 inactive 1 . 11610689 11686527 0,0,0 +chrX 11686527 11701456 active 4 . 11686527 11701456 255,255,153 +chrX 11701456 11712765 active 2 . 11701456 11712765 255,255,153 +chrX 11712765 11746577 active 2 . 11712765 11746577 255,255,153 +chrX 11746577 11766905 active 4 . 11746577 11766905 255,255,153 +chrX 11766905 11785839 active 2 . 11766905 11785839 255,255,153 +chrX 11785839 11799705 active 4 . 11785839 11799705 255,255,153 +chrX 11799705 11906621 inactive 1 . 11799705 11906621 0,0,0 +chrX 11906621 11929307 active 4 . 11906621 11929307 255,255,153 +chrX 11929307 12009897 inactive 1 . 11929307 12009897 0,0,0 +chrX 12009897 12289754 inactive 1 . 12009897 12289754 0,0,0 +chrX 12289754 12357295 inactive 1 . 12289754 12357295 0,0,0 +chrX 12357295 12366915 active 2 . 12357295 12366915 255,255,153 +chrX 12366915 12411713 inactive 1 . 12366915 12411713 0,0,0 +chrX 12411713 12477409 inactive 1 . 12411713 12477409 0,0,0 +chrX 12477409 12486015 active 4 . 12477409 12486015 255,255,153 +chrX 12486015 12505793 active 4 . 12486015 12505793 255,255,153 +chrX 12505793 12527615 inactive 1 . 12505793 12527615 0,0,0 +chrX 12527615 12552868 active 2 . 12527615 12552868 255,255,153 +chrX 12552868 12579560 active 2 . 12552868 12579560 255,255,153 +chrX 12579560 12609025 active 2 . 12579560 12609025 255,255,153 +chrX 12609025 12650758 active 2 . 12609025 12650758 255,255,153 +chrX 12650758 12658595 active 4 . 12650758 12658595 255,255,153 +chrX 12658595 12789761 inactive 1 . 12658595 12789761 0,0,0 +chrX 12789761 12803767 active 2 . 12789761 12803767 255,255,153 +chrX 12803767 12982019 inactive 1 . 12803767 12982019 0,0,0 +chrX 12982019 13020837 HP1 3 . 12982019 13020837 51,160,44 +chrX 13020837 13103946 inactive 1 . 13020837 13103946 0,0,0 +chrX 13103946 13152163 active 2 . 13103946 13152163 255,255,153 +chrX 13152163 13190917 active 2 . 13152163 13190917 255,255,153 +chrX 13190917 13228586 active 2 . 13190917 13228586 255,255,153 +chrX 13228586 13267526 inactive 1 . 13228586 13267526 0,0,0 +chrX 13267526 13281146 active 4 . 13267526 13281146 255,255,153 +chrX 13281146 13307186 active 2 . 13281146 13307186 255,255,153 +chrX 13307186 13315443 active 4 . 13307186 13315443 255,255,153 +chrX 13315443 13458855 inactive 1 . 13315443 13458855 0,0,0 +chrX 13458855 13500192 inactive 1 . 13458855 13500192 0,0,0 +chrX 13500192 13510432 active 4 . 13500192 13510432 255,255,153 +chrX 13510432 13519034 active 4 . 13510432 13519034 255,255,153 +chrX 13519034 13536968 active 2 . 13519034 13536968 255,255,153 +chrX 13536968 13612936 active 2 . 13536968 13612936 255,255,153 +chrX 13612936 13629924 active 4 . 13612936 13629924 255,255,153 +chrX 13629924 13651029 active 2 . 13629924 13651029 255,255,153 +chrX 13651029 13675959 active 2 . 13651029 13675959 255,255,153 +chrX 13675959 13716489 HP1 3 . 13675959 13716489 51,160,44 +chrX 13716489 13739931 active 2 . 13716489 13739931 255,255,153 +chrX 13739931 13774747 inactive 1 . 13739931 13774747 0,0,0 +chrX 13774747 13854096 inactive 1 . 13774747 13854096 0,0,0 +chrX 13854096 13890941 active 2 . 13854096 13890941 255,255,153 +chrX 13890941 13948002 inactive 1 . 13890941 13948002 0,0,0 +chrX 13948002 14094162 inactive 1 . 13948002 14094162 0,0,0 +chrX 14094162 14116686 active 2 . 14094162 14116686 255,255,153 +chrX 14116686 14137400 active 4 . 14116686 14137400 255,255,153 +chrX 14137400 14141507 active 2 . 14137400 14141507 255,255,153 +chrX 14141507 14177995 inactive 1 . 14141507 14177995 0,0,0 +chrX 14177995 14471029 inactive 1 . 14177995 14471029 0,0,0 +chrX 14471029 14498132 inactive 1 . 14471029 14498132 0,0,0 +chrX 14498132 14669946 inactive 1 . 14498132 14669946 0,0,0 +chrX 14669946 14720143 inactive 1 . 14669946 14720143 0,0,0 +chrX 14720143 14726423 active 4 . 14720143 14726423 255,255,153 +chrX 14726423 14735063 active 4 . 14726423 14735063 255,255,153 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255,255,153 +chrX 15488298 15547819 inactive 1 . 15488298 15547819 0,0,0 +chrX 15547819 15592083 inactive 1 . 15547819 15592083 0,0,0 +chrX 15592083 15606500 active 4 . 15592083 15606500 255,255,153 +chrX 15606500 15626295 active 4 . 15606500 15626295 255,255,153 +chrX 15626295 15643225 active 4 . 15626295 15643225 255,255,153 +chrX 15643225 15655942 active 4 . 15643225 15655942 255,255,153 +chrX 15655942 15680002 active 4 . 15655942 15680002 255,255,153 +chrX 15680002 15698795 active 4 . 15680002 15698795 255,255,153 +chrX 15698795 15708729 active 2 . 15698795 15708729 255,255,153 +chrX 15708729 15728801 active 4 . 15708729 15728801 255,255,153 +chrX 15728801 15743514 active 4 . 15728801 15743514 255,255,153 +chrX 15743514 15754877 active 4 . 15743514 15754877 255,255,153 +chrX 15754877 15764407 active 2 . 15754877 15764407 255,255,153 +chrX 15764407 15781478 active 4 . 15764407 15781478 255,255,153 +chrX 15781478 15803921 active 4 . 15781478 15803921 255,255,153 +chrX 15803921 15887237 inactive 1 . 15803921 15887237 0,0,0 +chrX 15887237 15951522 active 4 . 15887237 15951522 255,255,153 +chrX 15951522 16000350 active 2 . 15951522 16000350 255,255,153 +chrX 16000350 16042918 PcG 0 . 16000350 16042918 56,108,176 +chrX 16042918 16164943 PcG 0 . 16042918 16164943 56,108,176 +chrX 16164943 16207379 active 4 . 16164943 16207379 255,255,153 +chrX 16207379 16214465 active 4 . 16207379 16214465 255,255,153 +chrX 16214465 16226881 active 4 . 16214465 16226881 255,255,153 +chrX 16226881 16254310 active 4 . 16226881 16254310 255,255,153 +chrX 16254310 16279137 active 4 . 16254310 16279137 255,255,153 +chrX 16279137 16316498 active 4 . 16279137 16316498 255,255,153 +chrX 16316498 16331963 active 2 . 16316498 16331963 255,255,153 +chrX 16331963 16343304 active 4 . 16331963 16343304 255,255,153 +chrX 16343304 16441066 inactive 1 . 16343304 16441066 0,0,0 +chrX 16441066 16455606 active 4 . 16441066 16455606 255,255,153 +chrX 16455606 16480663 inactive 1 . 16455606 16480663 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active 2 . 17552393 17589966 255,255,153 +chrX 17589966 17604054 active 4 . 17589966 17604054 255,255,153 +chrX 17604054 17631974 active 2 . 17604054 17631974 255,255,153 +chrX 17631974 17645756 active 2 . 17631974 17645756 255,255,153 +chrX 17645756 17714877 PcG 0 . 17645756 17714877 56,108,176 +chrX 17714877 17736083 inactive 1 . 17714877 17736083 0,0,0 +chrX 17736083 17750625 active 4 . 17736083 17750625 255,255,153 +chrX 17750625 17791579 active 2 . 17750625 17791579 255,255,153 +chrX 17791579 17979152 inactive 1 . 17791579 17979152 0,0,0 +chrX 17979152 17995901 active 4 . 17979152 17995901 255,255,153 +chrX 17995901 18031773 inactive 1 . 17995901 18031773 0,0,0 +chrX 18031773 18133482 inactive 1 . 18031773 18133482 0,0,0 +chrX 18133482 18216195 PcG 0 . 18133482 18216195 56,108,176 +chrX 18216195 18261355 inactive 1 . 18216195 18261355 0,0,0 +chrX 18261355 18279664 active 4 . 18261355 18279664 255,255,153 +chrX 18279664 18304098 active 2 . 18279664 18304098 255,255,153 +chrX 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