Mercurial > repos > iuc > pysradb_search
annotate test-data/test_05.tabular @ 2:b91e1e70f3a1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 2d911e00c68a1be27d3627acd5020ee12378919b
| author | iuc |
|---|---|
| date | Mon, 23 Jan 2023 16:10:06 +0000 |
| parents | 1005ffbccd86 |
| children |
| rev | line source |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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changeset
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1 study_accession experiment_accession experiment_title sample_taxon_id sample_scientific_name experiment_library_strategy experiment_library_source experiment_library_selection sample_accession sample_alias experiment_instrument_model pool_member_spots run_1_size run_1_accession run_1_total_spots run_1_total_bases |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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2 SRP364041 SRX14464490 GSM5953857: MHCC97H_RNC-nanopore; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS12267183 GSM5953857 MinION 1079264 948584405 SRR18327309 1079264 1033957555 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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3 SRP362338 SRX14360489 GSM5931556: SUP-M2; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS12174011 GSM5931556 MinION 2037577 798137655 SRR18213996 2037577 924315795 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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4 SRP362338 SRX14360488 GSM5931555: COST; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS12174010 GSM5931555 MinION 899727 338675907 SRR18213997 899727 392469322 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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5 SRP362338 SRX14360487 GSM5931554: Karpas; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS12174009 GSM5931554 MinION 1734198 629115600 SRR18213998 1734198 726162043 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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6 SRP362338 SRX14360486 GSM5931553: SU-DHL-1; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS12174008 GSM5931553 MinION 1473477 647839329 SRR18213999 1473477 752499298 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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7 SRP344552 SRX12970590 GSM5671082: Drug3; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS10911457 GSM5671082 MinION 3595302 4029747451 SRR16770676 3595302 4470158434 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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8 SRP344552 SRX12970589 GSM5671081: Drug2; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS10911454 GSM5671081 MinION 4697490 5001236478 SRR16770675 4697490 5548374559 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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9 SRP344552 SRX12970588 GSM5671080: Drug1; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS10911453 GSM5671080 MinION 5082186 5461712070 SRR16770674 5082186 6059224616 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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10 SRP344552 SRX12970587 GSM5671079: Con3; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS10911456 GSM5671079 MinION 3938013 4457987427 SRR16770673 3938013 4946233812 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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11 SRP344552 SRX12970586 GSM5671078: Con2; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS10911455 GSM5671078 MinION 6211419 6541587648 SRR16770672 6211419 7258960045 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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12 SRP344552 SRX12970585 GSM5671077: Con1; Homo sapiens; RNA-Seq 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS10911452 GSM5671077 MinION 4391012 5030059285 SRR16770671 4391012 5584530949 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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13 SRP327036 SRX11355633 The cDNA reads of HT-1376 treated with IFN beta generated by Nanopore GridION long-read sequencer 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS9402525 HT1376_IFNB GridION 4131387 4053455556 SRR15045003 4131387 4462607152 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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14 SRP327036 SRX11355632 The cDNA reads of HT-1376 generated by Nanopore GridION long-read sequencer 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS9402523 HT1376_mock GridION 5248704 4711063243 SRR15045004 5248704 5213662036 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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15 SRP327036 SRX11355631 The cDNA reads of A549 treated with IFN beta generated by Nanopore GridION long-read sequencer 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS9402524 A549_IFNB GridION 4068179 4137656943 SRR15045005 4068179 4562233232 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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16 SRP327036 SRX11355630 The cDNA reads of A549 generated by Nanopore GridION long-read sequencer 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS9402522 A549_mock GridION 5439422 5712690623 SRR15045006 5439422 6304165733 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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17 DRP006784 DRX218802 MinION sequencing of SAMD00226213 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165690 SAMD00226213 MinION 3366513 2119221526 DRR228538 3366513 2773299827 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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18 DRP006784 DRX218801 MinION sequencing of SAMD00226212 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165689 SAMD00226212 MinION 3306271 2339482009 DRR228537 3306271 3050184097 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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19 DRP006784 DRX218800 MinION sequencing of SAMD00226211 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165688 SAMD00226211 MinION 3164764 2330757868 DRR228536 3164764 3065025046 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
changeset
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20 DRP006784 DRX218799 MinION sequencing of SAMD00226210 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165687 SAMD00226210 MinION 2527678 1876736359 DRR228535 2527678 2468871702 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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changeset
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21 DRP006784 DRX218798 MinION sequencing of SAMD00226209 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165686 SAMD00226209 MinION 4021818 4405996086 DRR228534 4021818 5482507325 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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22 DRP006784 DRX218797 MinION sequencing of SAMD00226208 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165685 SAMD00226208 MinION 3525069 4791720545 DRR228533 3525069 6090073534 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
diff
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23 DRP006784 DRX218796 MinION sequencing of SAMD00226207 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165684 SAMD00226207 MinION 3782177 5013672301 DRR228532 3782177 6130029268 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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24 DRP006784 DRX218795 MinION sequencing of SAMD00226206 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165683 SAMD00226206 MinION 3796960 5722906607 DRR228531 3796960 7162516555 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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25 DRP006784 DRX218794 MinION sequencing of SAMD00226205 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165682 SAMD00226205 MinION 3910088 4834546257 DRR228530 3910088 5957220765 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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26 DRP006784 DRX218793 MinION sequencing of SAMD00226204 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165681 SAMD00226204 MinION 3734261 4600135570 DRR228529 3734261 5711643212 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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27 DRP006784 DRX218792 MinION sequencing of SAMD00226203 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165680 SAMD00226203 MinION 3694667 4894141426 DRR228528 3694667 6101767665 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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28 DRP006784 DRX218791 MinION sequencing of SAMD00226202 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165679 SAMD00226202 MinION 3248921 4589391538 DRR228527 3248921 5623410669 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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29 DRP006784 DRX218790 MinION sequencing of SAMD00226201 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165678 SAMD00226201 MinION 4333762 5077321032 DRR228526 4333762 6303451503 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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30 DRP006784 DRX218789 MinION sequencing of SAMD00226200 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165677 SAMD00226200 MinION 4264033 5807197866 DRR228525 4264033 7288691756 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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31 DRP006784 DRX218788 MinION sequencing of SAMD00226199 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165676 SAMD00226199 MinION 3941718 5874313289 DRR228524 3941718 7452048411 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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32 DRP006784 DRX218787 MinION sequencing of SAMD00226198 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165675 SAMD00226198 MinION 3778281 5002152144 DRR228523 3778281 6388850159 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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33 DRP006784 DRX218786 MinION sequencing of SAMD00226197 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165674 SAMD00226197 MinION 4472949 5299905442 DRR228522 4472949 6535575850 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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34 DRP006784 DRX218785 MinION sequencing of SAMD00226196 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165673 SAMD00226196 MinION 2319979 2725613781 DRR228521 2319979 3333376869 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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35 DRP006784 DRX218784 MinION sequencing of SAMD00226195 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165672 SAMD00226195 MinION 4076481 5395052714 DRR228520 4076481 6750854750 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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36 DRP006784 DRX218783 MinION sequencing of SAMD00226194 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165671 SAMD00226194 MinION 4427220 6549721894 DRR228519 4427220 8248195300 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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37 DRP006784 DRX218782 MinION sequencing of SAMD00226193 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165670 SAMD00226193 MinION 2864884 4504239069 DRR228518 2864884 5773222991 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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38 DRP006784 DRX218781 MinION sequencing of SAMD00226192 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165669 SAMD00226192 MinION 994111 1272105387 DRR228517 994111 1451773725 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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39 DRP006784 DRX218780 MinION sequencing of SAMD00226191 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS165668 SAMD00226191 MinION 3799001 4636674066 DRR228516 3799001 5670567152 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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40 SRP254471 SRX9103576 RNA seqencing of A375 cell line sensitive to BRAF inhibitor 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS6395584 A375 S MinION SRR12620695 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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41 SRP254471 SRX9103575 RNA seqencing of A375 cell line resistant to BRAF inhibitor 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA SRS6395583 A375 R MinION SRR12620696 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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42 DRP005565 DRX165666 MinION sequencing of SAMD00169379 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS138540 SAMD00169379 MinION 3164290 3676429048 DRR175098 3164290 4533271547 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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43 DRP005565 DRX165665 MinION sequencing of SAMD00169378 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS138539 SAMD00169378 MinION 2863544 3853899018 DRR175097 2863544 4944525742 |
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1005ffbccd86
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
iuc
parents:
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44 DRP005565 DRX165664 MinION sequencing of SAMD00169377 9606 Homo sapiens RNA-Seq TRANSCRIPTOMIC cDNA DRS138538 SAMD00169377 MinION 3765322 4395067967 DRR175096 3765322 5403685814 |