Mercurial > repos > iuc > pysradb_search

comparison test-data/test_06.tabular @ 0:1005ffbccd86 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/pysradb commit 95f13fef86ee81a617814a386cb371e94cf45577
author iuc
date Fri, 11 Nov 2022 07:35:39 +0000
parents
children f63cf0adfd87
comparison
equal deleted inserted replaced
-1:000000000000 0:1005ffbccd86
1 study_accession experiment_accession experiment_title sample_taxon_id sample_scientific_name experiment_library_strategy experiment_library_source experiment_library_selection sample_accession sample_alias experiment_instrument_model pool_member_spots run_1_size run_1_accession run_1_total_spots run_1_total_bases experiment_alias experiment_base_coord experiment_center_name experiment_external_id experiment_library_construction_protocol experiment_library_name experiment_platform experiment_read_class experiment_read_index experiment_read_type experiment_sample_descriptor_accession experiment_sample_descriptor_refcenter experiment_sample_descriptor_refname experiment_spot_length library_layout pool_external_id pool_member_accession pool_member_bases pool_member_member_name pool_member_organism pool_member_sample_name pool_member_sample_title pool_member_tax_id run_1_alias run_1_base_A_count run_1_base_C_count run_1_base_G_count run_1_base_N_count run_1_base_T_count run_1_center_name run_1_cloudfile_1_filetype run_1_cloudfile_1_location run_1_cloudfile_1_provider run_1_cloudfile_2_filetype run_1_cloudfile_2_location run_1_cloudfile_2_provider run_1_cluster_name run_1_database_1 run_1_has_taxanalysis run_1_is_public run_1_load_done run_1_published run_1_srafile_1_alternative_1_access_type run_1_srafile_1_alternative_1_free_egress run_1_srafile_1_alternative_1_org run_1_srafile_1_alternative_1_url run_1_srafile_1_alternative_2_access_type run_1_srafile_1_alternative_2_free_egress run_1_srafile_1_alternative_2_org run_1_srafile_1_alternative_2_url run_1_srafile_1_alternative_3_access_type run_1_srafile_1_alternative_3_free_egress run_1_srafile_1_alternative_3_org run_1_srafile_1_alternative_3_url run_1_srafile_1_cluster run_1_srafile_1_date run_1_srafile_1_filename run_1_srafile_1_md5 run_1_srafile_1_semantic_name run_1_srafile_1_size run_1_srafile_1_sratoolkit run_1_srafile_1_supertype run_1_srafile_1_url run_1_static_data_available run_1_total_base_count run_1_total_base_cs_native run_set_bases run_set_bytes run_set_runs run_set_spots sample_attributes_1_tag sample_attributes_1_value sample_attributes_2_tag sample_attributes_2_value sample_attributes_3_tag sample_attributes_3_value sample_attributes_4_tag sample_attributes_4_value sample_attributes_5_tag sample_attributes_5_value sample_attributes_6_tag sample_attributes_6_value sample_description sample_external_id_1 sample_external_id_1_namespace sample_title study_alias study_center_name study_center_project_name study_external_id_1 study_external_id_1_namespace study_study_abstract study_study_title study_study_type_existing_study_type submission_accession submission_alias submission_center_name submission_lab_name
2 DRP008863 DRX234163 NextSeq 500 sequencing of SAMD00246673 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250781 SAMD00246673 NextSeq 500 10077080 321156005 DRR244366 10077080 841466642 DRX234163 1 CHUBU SAMD00246673 TruSeq RNA library prep kit v2 myb_Salt_r3 ILLUMINA Application Read 0 Forward DRS250781 CHUBU DRS250781 86 SINGLE SAMD00246673 DRS250781 841466642 Arabidopsis thaliana SAMD00246673 myb3r135_7DAG_24h salt treatment 3702 DRR244366 217241699 205753833 200326567 2134 218142409 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""10077080"" /><Elements count=""841466642"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244366/DRR244366 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244366/DRR244366.1 public 2022-08-10 12:33:09 DRR244366 e53a7eb58a9113079018a4305e449613 run 321157826 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244366/DRR244366 1 841466642 false 841466642 321156005 1 10077080 sample_name myb3r135_salt24h age 8 day old genotype myb3r1 myb3r3 myb3r3 triple mutant tissue_type whole seedling treatment 150 mM NaCl for 24 hours ecotype Columbia myb3r1 myb3r3 myb3r5 seedlings were treated with 150 mM NaCl for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246673 BioSample myb3r135_7DAG_24h salt treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
3 DRP008863 DRX234162 NextSeq 500 sequencing of SAMD00246672 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250780 SAMD00246672 NextSeq 500 12707941 417558824 DRR244365 12707941 1061050593 DRX234162 1 CHUBU SAMD00246672 TruSeq RNA library prep kit v2 myb_Cont_r3 ILLUMINA Application Read 0 Forward DRS250780 CHUBU DRS250780 86 SINGLE SAMD00246672 DRS250780 1061050593 Arabidopsis thaliana SAMD00246672 myb3r135_7DAG_24h control treatment 3702 DRR244365 272077671 262904885 253228390 4518 272835129 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""12707941"" /><Elements count=""1061050593"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244365/DRR244365 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244365/DRR244365 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244365/DRR244365.1 public 2022-08-10 12:33:30 DRR244365 322190ad0855f3a4a4060ff3d1a41f5a run 417560652 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244365/DRR244365 1 1061050593 false 1061050593 417558824 1 12707941 sample_name myb3r135_mock age 8 day old genotype myb3r1 myb3r3 myb3r3 triple mutant tissue_type whole seedling treatment mock ecotype Columbia myb3r1 myb3r3 myb3r5 seedlings were mock-treated for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246672 BioSample myb3r135_7DAG_24h control treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
4 DRP008863 DRX234161 NextSeq 500 sequencing of SAMD00246671 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250779 SAMD00246671 NextSeq 500 10833863 353509516 DRR244364 10833863 904596684 DRX234161 1 CHUBU SAMD00246671 TruSeq RNA library prep kit v2 Col_Salt_r3 ILLUMINA Application Read 0 Forward DRS250779 CHUBU DRS250779 86 SINGLE SAMD00246671 DRS250779 904596684 Arabidopsis thaliana SAMD00246671 Col_7DAG_24h salt treatment 3702 DRR244364 232350490 223066154 214906934 3709 234269397 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""10833863"" /><Elements count=""904596684"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244364/DRR244364 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244364/DRR244364 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244364/DRR244364.1 public 2022-08-10 12:34:37 DRR244364 2dca09477e6e5ca21d0edb28096b342b run 353511343 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244364/DRR244364 1 904596684 false 904596684 353509516 1 10833863 sample_name Col_salt24h age 8 day old genotype wild type tissue_type whole seedling treatment 150 mM NaCl for 24 hours ecotype Columbia Wild type Col seedlings were treated with 150 mM NaCl for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246671 BioSample Col_7DAG_24h salt treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
5 DRP008863 DRX234160 NextSeq 500 sequencing of SAMD00246670 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250778 SAMD00246670 NextSeq 500 15198010 496240398 DRR244363 15198010 1269137186 DRX234160 1 CHUBU SAMD00246670 TruSeq RNA library prep kit v2 Col_Cont_r3 ILLUMINA Application Read 0 Forward DRS250778 CHUBU DRS250778 86 SINGLE SAMD00246670 DRS250778 1269137186 Arabidopsis thaliana SAMD00246670 Col_7DAG_24h control treatment 3702 DRR244363 319500778 318763054 309759268 5446 321108640 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""15198010"" /><Elements count=""1269137186"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244363/DRR244363 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244363/DRR244363 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244363/DRR244363.1 public 2022-08-10 12:34:15 DRR244363 62954dc65f8f20d1091d4e493f636ee7 run 496242221 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244363/DRR244363 1 1269137186 false 1269137186 496240398 1 15198010 sample_name Col_mock age 8 day old genotype wild type tissue_type whole seedling treatment mock ecotype Columbia Wild type Col seedlings were mock-treated for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246670 BioSample Col_7DAG_24h control treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
6 DRP008863 DRX234155 NextSeq 500 sequencing of SAMD00246673 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250781 SAMD00246673 NextSeq 500 8316950 266221232 DRR244358 8316950 694366365 DRX234155 1 CHUBU SAMD00246673 TruSeq RNA library prep kit v2 myb_Salt_r2 ILLUMINA Application Read 0 Forward DRS250781 CHUBU DRS250781 86 SINGLE SAMD00246673 DRS250781 694366365 Arabidopsis thaliana SAMD00246673 myb3r135_7DAG_24h salt treatment 3702 DRR244358 178628363 169140625 166285876 1730 180309771 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""8316950"" /><Elements count=""694366365"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244358/DRR244358 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244358/DRR244358 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244358/DRR244358.1 public 2022-08-10 12:33:52 DRR244358 144b6585d95d517844b5f2227e724f49 run 266223052 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244358/DRR244358 1 694366365 false 694366365 266221232 1 8316950 sample_name myb3r135_salt24h age 8 day old genotype myb3r1 myb3r3 myb3r3 triple mutant tissue_type whole seedling treatment 150 mM NaCl for 24 hours ecotype Columbia myb3r1 myb3r3 myb3r5 seedlings were treated with 150 mM NaCl for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246673 BioSample myb3r135_7DAG_24h salt treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
7 DRP008863 DRX234154 NextSeq 500 sequencing of SAMD00246672 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250780 SAMD00246672 NextSeq 500 9237421 304819387 DRR244357 9237421 771273641 DRX234154 1 CHUBU SAMD00246672 TruSeq RNA library prep kit v2 myb_Cont_r2 ILLUMINA Application Read 0 Forward DRS250780 CHUBU DRS250780 86 SINGLE SAMD00246672 DRS250780 771273641 Arabidopsis thaliana SAMD00246672 myb3r135_7DAG_24h control treatment 3702 DRR244357 196991668 190316147 186820462 3267 197142097 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""9237421"" /><Elements count=""771273641"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244357/DRR244357 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244357/DRR244357.1 public 2022-08-10 12:33:32 DRR244357 d75cdc1c24e24453c00df2eee6e33832 run 304821209 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244357/DRR244357 1 771273641 false 771273641 304819387 1 9237421 sample_name myb3r135_mock age 8 day old genotype myb3r1 myb3r3 myb3r3 triple mutant tissue_type whole seedling treatment mock ecotype Columbia myb3r1 myb3r3 myb3r5 seedlings were mock-treated for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246672 BioSample myb3r135_7DAG_24h control treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
8 DRP008863 DRX234153 NextSeq 500 sequencing of SAMD00246671 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250779 SAMD00246671 NextSeq 500 11552257 378668250 DRR244356 11552257 964591478 DRX234153 1 CHUBU SAMD00246671 TruSeq RNA library prep kit v2 Col_Salt_r2 ILLUMINA Application Read 0 Forward DRS250779 CHUBU DRS250779 86 SINGLE SAMD00246671 DRS250779 964591478 Arabidopsis thaliana SAMD00246671 Col_7DAG_24h salt treatment 3702 DRR244356 246840721 238746807 231296067 4233 247703650 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""11552257"" /><Elements count=""964591478"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244356/DRR244356 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244356/DRR244356 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244356/DRR244356.1 public 2022-08-10 12:34:43 DRR244356 57bbcf263b0d81399b206a6e3f010175 run 378670075 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244356/DRR244356 1 964591478 false 964591478 378668250 1 11552257 sample_name Col_salt24h age 8 day old genotype wild type tissue_type whole seedling treatment 150 mM NaCl for 24 hours ecotype Columbia Wild type Col seedlings were treated with 150 mM NaCl for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246671 BioSample Col_7DAG_24h salt treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
9 DRP008863 DRX234152 NextSeq 500 sequencing of SAMD00246670 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250778 SAMD00246670 NextSeq 500 12100266 394434917 DRR244355 12100266 1010182169 DRX234152 1 CHUBU SAMD00246670 TruSeq RNA library prep kit v2 Col_Cont_r2 ILLUMINA Application Read 0 Forward DRS250778 CHUBU DRS250778 86 SINGLE SAMD00246670 DRS250778 1010182169 Arabidopsis thaliana SAMD00246670 Col_7DAG_24h control treatment 3702 DRR244355 261049089 247945899 239968991 4319 261213871 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""12100266"" /><Elements count=""1010182169"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244355/DRR244355 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244355/DRR244355 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244355/DRR244355.1 public 2022-08-10 12:34:17 DRR244355 5c7510fdd468ef678734557b15e783dc run 394436735 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244355/DRR244355 1 1010182169 false 1010182169 394434917 1 12100266 sample_name Col_mock age 8 day old genotype wild type tissue_type whole seedling treatment mock ecotype Columbia Wild type Col seedlings were mock-treated for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246670 BioSample Col_7DAG_24h control treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
10 DRP008863 DRX234147 NextSeq 500 sequencing of SAMD00246673 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250781 SAMD00246673 NextSeq 500 10997702 351845201 DRR244350 10997702 918306581 DRX234147 1 CHUBU SAMD00246673 TruSeq RNA library prep kit v2 myb_Salt_r1 ILLUMINA Application Read 0 Forward DRS250781 CHUBU DRS250781 86 SINGLE SAMD00246673 DRS250781 918306581 Arabidopsis thaliana SAMD00246673 myb3r135_7DAG_24h salt treatment 3702 DRR244350 236270140 225720983 218070765 2310 238242383 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""10997702"" /><Elements count=""918306581"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244350/DRR244350 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244350/DRR244350 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244350/DRR244350.1 public 2022-08-10 12:33:19 DRR244350 c90cca7fc022c2934d07262d4bf690bd run 351847021 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244350/DRR244350 1 918306581 false 918306581 351845201 1 10997702 sample_name myb3r135_salt24h age 8 day old genotype myb3r1 myb3r3 myb3r3 triple mutant tissue_type whole seedling treatment 150 mM NaCl for 24 hours ecotype Columbia myb3r1 myb3r3 myb3r5 seedlings were treated with 150 mM NaCl for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246673 BioSample myb3r135_7DAG_24h salt treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
11 DRP008863 DRX234146 NextSeq 500 sequencing of SAMD00246672 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250780 SAMD00246672 NextSeq 500 12921662 427189150 DRR244349 12921662 1078936294 DRX234146 1 CHUBU SAMD00246672 TruSeq RNA library prep kit v2 myb_Cont_r1 ILLUMINA Application Read 0 Forward DRS250780 CHUBU DRS250780 86 SINGLE SAMD00246672 DRS250780 1078936294 Arabidopsis thaliana SAMD00246672 myb3r135_7DAG_24h control treatment 3702 DRR244349 278515666 265806252 254431285 4443 280178648 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""12921662"" /><Elements count=""1078936294"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244349/DRR244349 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244349/DRR244349 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244349/DRR244349.1 public 2022-08-10 12:33:53 DRR244349 ec73564e4e4766c2540b267cd27f010d run 427190973 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244349/DRR244349 1 1078936294 false 1078936294 427189150 1 12921662 sample_name myb3r135_mock age 8 day old genotype myb3r1 myb3r3 myb3r3 triple mutant tissue_type whole seedling treatment mock ecotype Columbia myb3r1 myb3r3 myb3r5 seedlings were mock-treated for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246672 BioSample myb3r135_7DAG_24h control treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
12 DRP008863 DRX234145 NextSeq 500 sequencing of SAMD00246671 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250779 SAMD00246671 NextSeq 500 12585531 415962802 DRR244348 12585531 1051121271 DRX234145 1 CHUBU SAMD00246671 TruSeq RNA library prep kit v2 Col_Salt_r1 ILLUMINA Application Read 0 Forward DRS250779 CHUBU DRS250779 86 SINGLE SAMD00246671 DRS250779 1051121271 Arabidopsis thaliana SAMD00246671 Col_7DAG_24h salt treatment 3702 DRR244348 262635693 266188310 257327118 4369 264965781 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""12585531"" /><Elements count=""1051121271"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244348/DRR244348 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244348/DRR244348 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244348/DRR244348.1 public 2022-08-10 12:34:44 DRR244348 659efbf7f61872ac6efc1a5cf8bde88f run 415964627 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244348/DRR244348 1 1051121271 false 1051121271 415962802 1 12585531 sample_name Col_salt24h age 8 day old genotype wild type tissue_type whole seedling treatment 150 mM NaCl for 24 hours ecotype Columbia Wild type Col seedlings were treated with 150 mM NaCl for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246671 BioSample Col_7DAG_24h salt treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
13 DRP008863 DRX234144 NextSeq 500 sequencing of SAMD00246670 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS250778 SAMD00246670 NextSeq 500 12814785 418969197 DRR244347 12814785 1070030618 DRX234144 1 CHUBU SAMD00246670 TruSeq RNA library prep kit v2 Col_Cont_r1 ILLUMINA Application Read 0 Forward DRS250778 CHUBU DRS250778 86 SINGLE SAMD00246670 DRS250778 1070030618 Arabidopsis thaliana SAMD00246670 Col_7DAG_24h control treatment 3702 DRR244347 276562745 262362352 253056511 5393 278043617 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""12814785"" /><Elements count=""1070030618"" /></Statistics></Table></Database>" 1 true true 2022-08-10 12:31:34 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244347/DRR244347 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244347/DRR244347 gcp identity gs.US GCP gs://sra-pub-run-2/sra/DRR244347/DRR244347.1 public 2022-08-10 12:34:53 DRR244347 2404780abb312680ae9bfcc4bb7c6b02 run 418971020 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR244347/DRR244347 1 1070030618 false 1070030618 418969197 1 12814785 sample_name Col_mock age 8 day old genotype wild type tissue_type whole seedling treatment mock ecotype Columbia Wild type Col seedlings were mock-treated for 24 hours after grwon for 7 days on half-strength MS medium containing 2% sucrose under continuous light condition SAMD00246670 BioSample Col_7DAG_24h control treatment DRP008863 CHUBU Arabidopsis thaliana PRJDB10553 BioProject Three MYB3R proteins, MYB3R1, MYB3R3 and MYB3R5, are responsible for transcriptional repression of G2/M-specific genes to maintain their proper expression levels during cell cycle and plant development. Importantly, MYB3R repressors were found to be required for active growth repression under salt stress conditions. To understand the mechanisms of the MYB3R-mediated growth repression under salt stress, transcriptome analysis was performed for Arabidopsis seedlings treated with high concentration of NaCl continuously or transiently. Roles of MYB3R repressors for gene expression changes under salt stress Other DRA010790 DRA010790 CHUBU Chubu University
14 DRP008429 DRX218758 NextSeq 500 sequencing of SAMD00227985 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235491 SAMD00227985 NextSeq 500 11647755 416563035 DRR228494 11647755 1001706915 DRX218758 1 CHUBU SAMD00227985 NEBNext Ultra DNA Library Prep Kit for Illumina WT_12_3 ILLUMINA Application Read 0 Forward DRS235491 CHUBU DRS235491 86 SINGLE SAMD00227985 DRS235491 1001706915 Arabidopsis thaliana SAMD00227985 WT_12 3702 DRR228494 263477176 240385788 238894690 2782 258946479 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""11647755"" /><Elements count=""1001706915"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:22:14 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228494/DRR228494 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228494/DRR228494 gcp identity gs.US GCP gs://sra-pub-run-9/DRR228494/DRR228494.1 public 2022-04-12 12:22:24 DRR228494 df1c218fb5016da9e2b40e598afa27c1 run 416564858 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228494/DRR228494 1 1001706915 false 1001706915 416563035 1 11647755 sample_name WT_12 age 14-day-old cold_stress_hours 12 collection_date 2019-06-24 genotype wild type tissue_type whole seedlings WT (Col-0) plants under the cold stress conditions for 12 hour from ZT2 SAMD00227985 BioSample WT_12 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University
15 DRP008429 DRX218757 NextSeq 500 sequencing of SAMD00227984 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235490 SAMD00227984 NextSeq 500 11660980 393314912 DRR228493 11660980 1002844280 DRX218757 1 CHUBU SAMD00227984 NEBNext Ultra DNA Library Prep Kit for Illumina WT_3_3 ILLUMINA Application Read 0 Forward DRS235490 CHUBU DRS235490 86 SINGLE SAMD00227984 DRS235490 1002844280 Arabidopsis thaliana SAMD00227984 WT_3 3702 DRR228493 276494020 229709012 226372617 3566 270265065 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""11660980"" /><Elements count=""1002844280"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:22:14 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228493/DRR228493 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228493/DRR228493 gcp identity gs.US GCP gs://sra-pub-run-12/DRR228493/DRR228493.1 public 2022-04-12 12:21:46 DRR228493 7026f03462bd4be539d8b883238a201d run 393316143 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228493/DRR228493 1 1002844280 false 1002844280 393314912 1 11660980 sample_name WT_3 age 14-day-old cold_stress_hours 3 collection_date 2019-06-24 genotype wild type tissue_type whole seedlings WT (Col-0) plants under the cold stress conditions for 3 hour from ZT2 SAMD00227984 BioSample WT_3 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University
16 DRP008429 DRX218756 NextSeq 500 sequencing of SAMD00227983 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235489 SAMD00227983 NextSeq 500 13273886 446774784 DRR228492 13273886 1141554196 DRX218756 1 CHUBU SAMD00227983 NEBNext Ultra DNA Library Prep Kit for Illumina WT_0_3 ILLUMINA Application Read 0 Forward DRS235489 CHUBU DRS235489 86 SINGLE SAMD00227983 DRS235489 1141554196 Arabidopsis thaliana SAMD00227983 WT_0 3702 DRR228492 314772649 261248885 257960596 4002 307568064 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""13273886"" /><Elements count=""1141554196"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:22:14 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228492/DRR228492 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228492/DRR228492 gcp identity gs.US GCP gs://sra-pub-run-2/DRR228492/DRR228492.1 public 2022-04-12 12:22:55 DRR228492 353f78b468cdcdd42e512acf1f421059 run 446776014 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228492/DRR228492 1 1141554196 false 1141554196 446774784 1 13273886 sample_name WT_0 age 14-day-old cold_stress_hours 0 collection_date 2019-06-24 genotype wild type tissue_type whole seedlings WT (Col-0) plants under the normal growth conditions at 2 hour after dawn (ZT2) SAMD00227983 BioSample WT_0 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University
17 DRP008429 DRX218755 NextSeq 500 sequencing of SAMD00227982 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235488 SAMD00227982 NextSeq 500 8875819 320965496 DRR228491 8875819 763320418 DRX218755 1 CHUBU SAMD00227982 NEBNext Ultra DNA Library Prep Kit for Illumina r48_12_3 ILLUMINA Application Read 0 Forward DRS235488 CHUBU DRS235488 86 SINGLE SAMD00227982 DRS235488 763320418 Arabidopsis thaliana SAMD00227982 rve48_12 3702 DRR228491 210592983 174401463 173312581 1974 205011417 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""8875819"" /><Elements count=""763320418"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:22:14 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228491/DRR228491 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228491/DRR228491 gcp identity gs.US GCP gs://sra-pub-run-3/DRR228491/DRR228491.1 public 2022-04-12 12:21:09 DRR228491 73aeb463276c206aa41f12add4dac462 run 320967316 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228491/DRR228491 1 763320418 false 763320418 320965496 1 8875819 sample_name r48_12 age 14-day-old cold_stress_hours 12 collection_date 2019-06-24 genotype rve4 rve8 tissue_type whole seedlings rve4 rve8 mutant plants under the cold stress conditions for 12 hour from ZT2 SAMD00227982 BioSample rve48_12 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University
18 DRP008429 DRX218754 NextSeq 500 sequencing of SAMD00227981 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235487 SAMD00227981 NextSeq 500 15165885 502400983 DRR228490 15165885 1304266110 DRX218754 1 CHUBU SAMD00227981 NEBNext Ultra DNA Library Prep Kit for Illumina r48_3_3 ILLUMINA Application Read 0 Forward DRS235487 CHUBU DRS235487 86 SINGLE SAMD00227981 DRS235487 1304266110 Arabidopsis thaliana SAMD00227981 rve48_3 3702 DRR228490 359176604 297760568 295069565 4766 352254607 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""15165885"" /><Elements count=""1304266110"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:22:14 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228490/DRR228490 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228490/DRR228490 gcp identity gs.US GCP gs://sra-pub-run-3/DRR228490/DRR228490.1 public 2022-04-12 12:21:14 DRR228490 8d53cbdb5ca069810a1e4c2af83b9c3c run 502402216 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228490/DRR228490 1 1304266110 false 1304266110 502400983 1 15165885 sample_name r48_3 age 14-day-old cold_stress_hours 3 collection_date 2019-06-24 genotype rve4 rve8 tissue_type whole seedlings rve4 rve8 mutant plants under the cold stress conditions for 3 hour from ZT2 SAMD00227981 BioSample rve48_3 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University
19 DRP008429 DRX218753 NextSeq 500 sequencing of SAMD00227980 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235486 SAMD00227980 NextSeq 500 15187212 501850106 DRR228489 15187212 1306100232 DRX218753 1 CHUBU SAMD00227980 NEBNext Ultra DNA Library Prep Kit for Illumina r48_0_3 ILLUMINA Application Read 0 Forward DRS235486 CHUBU DRS235486 86 SINGLE SAMD00227980 DRS235486 1306100232 Arabidopsis thaliana SAMD00227980 rve48_0 3702 DRR228489 358607812 298955729 297427715 4774 351104202 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""15187212"" /><Elements count=""1306100232"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:24:40 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228489/DRR228489 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228489/DRR228489 gcp identity gs.US GCP gs://sra-pub-run-5/DRR228489/DRR228489.1 public 2022-04-12 12:22:11 DRR228489 660d223a0a0a89d1c8c21dec834162fe run 501851337 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228489/DRR228489 1 1306100232 false 1306100232 501850106 1 15187212 sample_name r48_0 age 14-day-old cold_stress_hours 0 collection_date 2019-06-24 genotype rve4 rve8 tissue_type whole seedlings rve4 rve8 mutant plants under the normal growth conditions at 2 hour after dawn (ZT2) SAMD00227980 BioSample rve48_0 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University
20 DRP008429 DRX218752 NextSeq 500 sequencing of SAMD00227979 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235485 SAMD00227979 NextSeq 500 13006006 464544238 DRR228488 13006006 1118516489 DRX218752 1 CHUBU SAMD00227979 NEBNext Ultra DNA Library Prep Kit for Illumina Clr48_12_3 ILLUMINA Application Read 0 Forward DRS235485 CHUBU DRS235485 86 SINGLE SAMD00227979 DRS235485 1118516489 Arabidopsis thaliana SAMD00227979 quad_12 3702 DRR228488 291308300 271620363 269869779 3179 285714868 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""13006006"" /><Elements count=""1118516489"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:22:13 anonymous worldwide NCBI https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228488/DRR228488 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228488/DRR228488 gcp identity gs.US GCP gs://sra-pub-run-10/DRR228488/DRR228488.1 public 2022-04-12 12:22:16 DRR228488 c4535e1ae353ca7b702c218f5dee501a run 464546063 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228488/DRR228488 1 1118516489 false 1118516489 464544238 1 13006006 sample_name Clr48_12 age 14-day-old cold_stress_hours 12 collection_date 2019-06-24 genotype cca1 lhy rve4 rve8 tissue_type whole seedlings cca1 lhy rve4 rve8 mutant plants under the cold stress conditions for 12 hour from ZT2 SAMD00227979 BioSample quad_12 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University
21 DRP008429 DRX218751 NextSeq 500 sequencing of SAMD00227978 3702 Arabidopsis thaliana RNA-Seq TRANSCRIPTOMIC RANDOM DRS235484 SAMD00227978 NextSeq 500 11941593 416101311 DRR228487 11941593 1003093742 DRX218751 1 CHUBU SAMD00227978 NEBNext Ultra DNA Library Prep Kit for Illumina Clr48_3_3 ILLUMINA Application Read 0 Forward DRS235484 CHUBU DRS235484 86 SINGLE SAMD00227978 DRS235484 1003093742 Arabidopsis thaliana SAMD00227978 quad_3 3702 DRR228487 274672358 229405455 229040046 3169 269972714 CHUBU run gs.US gs run s3.us-east-1 s3 public "<Database><Table name=""SEQUENCE""><Statistics source=""meta""><Rows count=""11941593"" /><Elements count=""1003093742"" /></Statistics></Table></Database>" 1 true true 2022-04-12 12:22:13 anonymous worldwide AWS https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228487/DRR228487 gcp identity gs.US GCP gs://sra-pub-run-7/DRR228487/DRR228487.1 public 2022-04-12 12:22:39 DRR228487 00d3b8388e7320bd796e17ebb0d6e993 run 416103140 1 Primary ETL https://sra-pub-run-odp.s3.amazonaws.com/sra/DRR228487/DRR228487 1 1003093742 false 1003093742 416101311 1 11941593 sample_name Clr48_3 age 14-day-old cold_stress_hours 3 collection_date 2019-06-24 genotype cca1 lhy rve4 rve8 tissue_type whole seedlings cca1 lhy rve4 rve8 mutant plants under the cold stress conditions for 3 hour from ZT2 SAMD00227978 BioSample quad_3 DRP008429 CHUBU Arabidopsis thaliana PRJDB9852 BioProject It was reported that CCA1 and LHY positively regulated the gene expression of DREB1A and DREB1C. In addition, we revealed that RVE4 and RVE8 directly activated the cold-inducible DREB1A expression. The cca1 lhy double mutant, rve4 rve8 double mutant (rve48), and cca1 lhy rve4 rve8 quadruple mutant (quad) plants were sensitive to the freezing stress. In order to comprehensively analyze downstream genes of RVE4/RVE8 and CCA1/LHY in the cold response, we conducted RNA sequence analyses. We used 14-day-old whole seedlings of wild type (Col-0), cca1 lhy, rve48 and quad mutant plants grown on GM agar plates under the normal growth conditions at ZT2 (2 h after dawn) and the cold stress conditions treated at 4°C for 3 h and 12 h. We have three biological replicates for this analysis. RNAseq analyses of the multiple mutant plants of CCA1/LHY and RVE4/RVE8 under cold stresses Transcriptome Analysis DRA010211 DRA010211 CHUBU Chubu University