Mercurial > repos > iuc > qiime_align_seqs

annotate test-data/summarize_taxa/1_L5.txt @ 7:e8bb88f051ec draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:44:03 -0500
parents 56adf8db7ce7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
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1 #SampleID BarcodeSequence LinkerPrimerSequence SampleType year month day subject days_since_epoch Description Unclassified;Other k__Bacteria;Other k__Bacteria;p__Proteobacteria Unclassified;Other;Other k__Bacteria;Other;Other k__Bacteria;p__Proteobacteria;Other Unclassified;Other;Other;Other k__Bacteria;Other;Other;Other k__Bacteria;p__Proteobacteria;Other;Other Unclassified;Other;Other;Other;Other k__Bacteria;Other;Other;Other;Other k__Bacteria;p__Proteobacteria;Other;Other;Other
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
2 f1 ACACTGTTCATG GTGCCAGCMGCCGCGGTAA feces 2008 10 22 1 14174 fecal1 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
3 f2 ACCAGACGATGC GTGCCAGCMGCCGCGGTAA feces 2008 10 23 1 14175 fecal2 0.0454545454545 0.954545454545 0.0 0.0454545454545 0.954545454545 0.0 0.0454545454545 0.954545454545 0.0 0.0454545454545 0.954545454545 0.0
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
4 f3 ACCAGACGATGC GTGCCAGCMGCCGCGGTAA feces 2008 10 23 1 14175 identical sequences to fecal2 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
5 f4 ACCAGACGATGC GTGCCAGCMGCCGCGGTAA feces 2008 10 23 1 14175 all sequences identical, map to GG 295053 at 97 percent id 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0 0.0 1.0 0.0
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
6 p1 AACGCACGCTAG GTGCCAGCMGCCGCGGTAA L_palm 2008 10 21 1 14173 palm1, contains one randomly generated sequence 0.130434782609 0.869565217391 0.0 0.130434782609 0.869565217391 0.0 0.130434782609 0.869565217391 0.0 0.130434782609 0.869565217391 0.0
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
7 p2 ACACTGTTCATG GTGCCAGCMGCCGCGGTAA L_palm 2008 10 22 1 14174 palm2 0.272727272727 0.681818181818 0.0454545454545 0.272727272727 0.681818181818 0.0454545454545 0.272727272727 0.681818181818 0.0454545454545 0.272727272727 0.681818181818 0.0454545454545
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
diff changeset
8 t1 AGTGAGAGAAGC GTGCCAGCMGCCGCGGTAA Tongue 2008 10 21 1 14173 tongue1, contains one randomly generated sequence 0.869565217391 0.130434782609 0.0 0.869565217391 0.130434782609 0.0 0.869565217391 0.130434782609 0.0 0.869565217391 0.130434782609 0.0
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
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9 t2 ATACTATTGCGC GTGCCAGCMGCCGCGGTAA Tongue 2008 10 22 1 14174 tongue2 0.681818181818 0.318181818182 0.0 0.681818181818 0.318181818182 0.0 0.681818181818 0.318181818182 0.0 0.681818181818 0.318181818182 0.0
56adf8db7ce7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
parents:
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10 not16S.1 ATACTATTGCGC GTGCCAGCMGCCGCGGTAA Other 2008 10 22 1 14174 randomly generated sequence plus some variants, these should not map to 16S 0.909090909091 0.0909090909091 0.0 0.909090909091 0.0909090909091 0.0 0.909090909091 0.0909090909091 0.0 0.909090909091 0.0909090909091 0.0