Mercurial > repos > iuc > qiime_align_seqs
view test-data/summarize_taxa_through_plots/mapping_categories/log_20170501132849.txt @ 2:adb832fbff2c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit e5d24fc90f811c8994ec8b72371ab4100d2c294c
author | iuc |
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date | Fri, 19 May 2017 04:11:22 -0400 |
parents | 56adf8db7ce7 |
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Logging started at 13:28:49 on 01 May 2017 QIIME version: 1.9.1 qiime_config values: pick_otus_reference_seqs_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta sc_queue all.q pynast_template_alignment_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta cluster_jobs_fp start_parallel_jobs.py assign_taxonomy_reference_seqs_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta torque_queue friendlyq jobs_to_start 1 denoiser_min_per_core 50 assign_taxonomy_id_to_taxonomy_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt temp_dir /var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/ blastall_fp blastall seconds_to_sleep 1 parameter file values: Input file md5 sums: test-data/summarize_taxa_through_plots/otu_table.biom: dda91090fbdc0f69056852247bcd924f test-data/summarize_taxa_through_plots/Fasting_Map.txt: e16159d7122035797076d66b1a287962 Executing commands. # Collapse samples in OTU table by categories command collapse_samples.py -m test-data/summarize_taxa_through_plots/Fasting_Map.txt -b test-data/summarize_taxa_through_plots/otu_table.biom --output_biom_fp summarize_taxa_through_plots_mapping_categories/Treatment_otu_table.biom --output_mapping_fp summarize_taxa_through_plots_mapping_categories/Treatment_map.txt --collapse_fields 'Treatment' Stdout: Stderr: # Summarize Taxonomy command summarize_taxa.py -i summarize_taxa_through_plots_mapping_categories/Treatment_otu_table.biom -o summarize_taxa_through_plots_mapping_categories Stdout: Stderr: # Plot Taxonomy Summary command plot_taxa_summary.py -i summarize_taxa_through_plots_mapping_categories/Treatment_otu_table_L2.txt,summarize_taxa_through_plots_mapping_categories/Treatment_otu_table_L3.txt,summarize_taxa_through_plots_mapping_categories/Treatment_otu_table_L4.txt,summarize_taxa_through_plots_mapping_categories/Treatment_otu_table_L5.txt,summarize_taxa_through_plots_mapping_categories/Treatment_otu_table_L6.txt -o summarize_taxa_through_plots_mapping_categories/taxa_summary_plots/ Stdout: Stderr: /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/matplotlib/collections.py:590: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison if self._edgecolors == str('face'): Logging stopped at 13:29:07 on 01 May 2017