Mercurial > repos > iuc > qiime_alpha_diversity
comparison test-data/summarize_taxa_through_plots/mapping/log_20170501130931.txt @ 0:2ceee245d97c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
author | iuc |
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date | Thu, 18 May 2017 09:32:36 -0400 |
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-1:000000000000 | 0:2ceee245d97c |
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1 Logging started at 13:09:31 on 01 May 2017 | |
2 QIIME version: 1.9.1 | |
3 | |
4 qiime_config values: | |
5 pick_otus_reference_seqs_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta | |
6 sc_queue all.q | |
7 pynast_template_alignment_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta | |
8 cluster_jobs_fp start_parallel_jobs.py | |
9 assign_taxonomy_reference_seqs_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta | |
10 torque_queue friendlyq | |
11 jobs_to_start 1 | |
12 denoiser_min_per_core 50 | |
13 assign_taxonomy_id_to_taxonomy_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt | |
14 temp_dir /var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/ | |
15 blastall_fp blastall | |
16 seconds_to_sleep 1 | |
17 | |
18 parameter file values: | |
19 | |
20 Input file md5 sums: | |
21 test-data/summarize_taxa_through_plots/otu_table.biom: dda91090fbdc0f69056852247bcd924f | |
22 test-data/summarize_taxa_through_plots/Fasting_Map.txt: e16159d7122035797076d66b1a287962 | |
23 | |
24 Executing commands. | |
25 | |
26 # Summarize Taxonomy command | |
27 summarize_taxa.py -i test-data/summarize_taxa_through_plots/otu_table.biom -o summarize_taxa_through_plots_mapping | |
28 | |
29 Stdout: | |
30 | |
31 Stderr: | |
32 | |
33 # Plot Taxonomy Summary command | |
34 plot_taxa_summary.py -i summarize_taxa_through_plots_mapping/otu_table_L2.txt,summarize_taxa_through_plots_mapping/otu_table_L3.txt,summarize_taxa_through_plots_mapping/otu_table_L4.txt,summarize_taxa_through_plots_mapping/otu_table_L5.txt,summarize_taxa_through_plots_mapping/otu_table_L6.txt -o summarize_taxa_through_plots_mapping/taxa_summary_plots/ | |
35 | |
36 Stdout: | |
37 | |
38 Stderr: | |
39 /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/matplotlib/collections.py:590: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison | |
40 if self._edgecolors == str('face'): | |
41 | |
42 | |
43 Logging stopped at 13:09:49 on 01 May 2017 |