Mercurial > repos > iuc > qiime_beta_diversity
comparison test-data/summarize_taxa_through_plots/mapping_sort/log_20170501134214.txt @ 0:0f76694d7591 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
| author | iuc |
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| date | Thu, 18 May 2017 09:38:35 -0400 |
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| -1:000000000000 | 0:0f76694d7591 |
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| 1 Logging started at 13:42:14 on 01 May 2017 | |
| 2 QIIME version: 1.9.1 | |
| 3 | |
| 4 qiime_config values: | |
| 5 pick_otus_reference_seqs_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta | |
| 6 sc_queue all.q | |
| 7 pynast_template_alignment_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta | |
| 8 cluster_jobs_fp start_parallel_jobs.py | |
| 9 assign_taxonomy_reference_seqs_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta | |
| 10 torque_queue friendlyq | |
| 11 jobs_to_start 1 | |
| 12 denoiser_min_per_core 50 | |
| 13 assign_taxonomy_id_to_taxonomy_fp /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt | |
| 14 temp_dir /var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/ | |
| 15 blastall_fp blastall | |
| 16 seconds_to_sleep 1 | |
| 17 | |
| 18 parameter file values: | |
| 19 | |
| 20 Input file md5 sums: | |
| 21 test-data/summarize_taxa_through_plots/otu_table.biom: dda91090fbdc0f69056852247bcd924f | |
| 22 test-data/summarize_taxa_through_plots/Fasting_Map.txt: e16159d7122035797076d66b1a287962 | |
| 23 | |
| 24 Executing commands. | |
| 25 | |
| 26 # Sort OTU Table command | |
| 27 sort_otu_table.py -i test-data/summarize_taxa_through_plots/otu_table.biom -o summarize_taxa_through_plots_mapping_sort/otu_table_sorted.biom | |
| 28 | |
| 29 Stdout: | |
| 30 | |
| 31 Stderr: | |
| 32 | |
| 33 # Summarize Taxonomy command | |
| 34 summarize_taxa.py -i summarize_taxa_through_plots_mapping_sort/otu_table_sorted.biom -o summarize_taxa_through_plots_mapping_sort | |
| 35 | |
| 36 Stdout: | |
| 37 | |
| 38 Stderr: | |
| 39 | |
| 40 # Plot Taxonomy Summary command | |
| 41 plot_taxa_summary.py -i summarize_taxa_through_plots_mapping_sort/otu_table_sorted_L2.txt,summarize_taxa_through_plots_mapping_sort/otu_table_sorted_L3.txt,summarize_taxa_through_plots_mapping_sort/otu_table_sorted_L4.txt,summarize_taxa_through_plots_mapping_sort/otu_table_sorted_L5.txt,summarize_taxa_through_plots_mapping_sort/otu_table_sorted_L6.txt -o summarize_taxa_through_plots_mapping_sort/taxa_summary_plots/ | |
| 42 | |
| 43 Stdout: | |
| 44 | |
| 45 Stderr: | |
| 46 /Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/matplotlib/collections.py:590: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison | |
| 47 if self._edgecolors == str('face'): | |
| 48 | |
| 49 | |
| 50 Logging stopped at 13:42:34 on 01 May 2017 |