view count_seqs.xml @ 2:45b4946c4458 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit d41cdeeec9fd0eb5612df0d5af63a979d1c9ec87

<tool id="qiime_count_seqs" name="Count sequences" version="@WRAPPER_VERSION@.0">
    <description>Count the sequences in a fasta file</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <version_command>count_seqs.py --version</version_command>
    <command detect_errors="aggressive"><![CDATA[
        count_seqs.py
            --input_fps '$input_fps'
            -o '$output_fp'
    ]]></command>
    <inputs>
        <param argument="--input_fps" type="data" format="fasta" multiple="True" label="Input sequence file" help=""/>
    </inputs>
    <outputs>
        <data name="output_fp" format="txt" label="${tool.name} on ${on_string}: sequence counts"/>
    </outputs>
    <tests>
        <test>
            <param name="input_fps" value="count_seqs/in.fasta,count_seqs/in1.fasta,count_seqs/in2.fasta"/>
            <output name="output_fp" ftype="txt">
                <assert_contents>
                    <has_text text="Sequence lengths"/>
                    <has_text text="Total"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
**What it does**

This tool counts the sequences in fasta files

More information about this tool is available on
`QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_.
    ]]></help>
    <citations>
        <expand macro="citations"/>
    </citations>
</tool>