Mercurial > repos > iuc > qiime_count_seqs

view test-data/split_libraries/split_library_log @ 2:45b4946c4458 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit d41cdeeec9fd0eb5612df0d5af63a979d1c9ec87
author iuc
date Mon, 10 Jul 2017 16:44:52 -0400
parents 0b33f6fd92a3
children
line wrap: on
line source

Number raw input seqs	8

Length outside bounds of 200 and 1000	0
Num ambiguous bases exceeds limit of 6	0
Missing Qual Score	0
Mean qual score below minimum of 25	0
Max homopolymer run exceeds limit of 6	0
Num mismatches in primer exceeds limit of 0: 0

Sequence length details for all sequences passing quality filters:
Raw len min/max/avg	244.0/276.0/255.5
Wrote len min/max/avg	211.0/243.0/222.5

Barcodes corrected/not	0/0
Uncorrected barcodes will not be written to the output fasta file.
Corrected barcodes will be written with the appropriate barcode category.
Corrected but unassigned sequences will not be written unless --retain_unassigned_reads is enabled.

Total valid barcodes that are not in mapping file	0
Sequences associated with valid barcodes that are not in the mapping file will not be written.

Barcodes in mapping file
Num Samples	3
Sample ct min/max/mean: 2 / 4 / 2.67
Sample	Sequence Count	Barcode
PC.634	4	ACAGAGTCGGCT
PC.354	2	AGCACGAGCCTA
PC.481	2	ACCAGCGACTAG
PC.593	0	AGCAGCACTTGT
PC.636	0	ACGGTGAGTGTC
PC.635	0	ACCGCAGAGTCA
PC.356	0	ACAGACCACTCA
PC.607	0	AACTGTGCGTAC
PC.355	0	AACTCGTCGATG

Total number seqs written	8