view count_seqs.xml @ 4:45c3d114b2dd draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed

<tool id="qiime_count_seqs" name="Count the sequences" version="@WRAPPER_VERSION@.0">
    <description>in a fasta file (count_seqs)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <version_command>count_seqs.py --version</version_command>
    <command detect_errors="aggressive"><![CDATA[
count_seqs.py
    --input_fps '$input_fps'
    -o '$output_fp'
    ]]></command>
    <inputs>
        <param argument="--input_fps" type="data" format="fasta" multiple="true" label="Input sequence file"/>
    </inputs>
    <outputs>
        <data name="output_fp" format="txt" label="${tool.name} on ${on_string}: sequence counts"/>
    </outputs>
    <tests>
        <test>
            <param name="input_fps" value="count_seqs/in.fasta,count_seqs/in1.fasta,count_seqs/in2.fasta"/>
            <output name="output_fp" ftype="txt">
                <assert_contents>
                    <has_text text="Sequence lengths"/>
                    <has_text text="Total"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help><![CDATA[
**What it does**

This tool counts the sequences in fasta files

More information about this tool is available on
`QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_.
    ]]></help>
    <citations>
        <expand macro="citations"/>
    </citations>
</tool>