Mercurial > repos > iuc > qiime_extract_barcodes
changeset 1:88a13a51747b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
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--- a/beta_diversity_through_plots_html_generation.py Sat Aug 05 07:28:39 2017 -0400 +++ b/beta_diversity_through_plots_html_generation.py Tue Oct 30 19:59:19 2018 -0400 @@ -21,7 +21,7 @@ for directory in dir_list: regexp_result = re.search( - '([a-zA-Z\_]*)_emperor_pcoa_plot', + r'([a-zA-Z\_]*)_emperor_pcoa_plot', directory) metric = regexp_result.group(1) s += '\t\t\t\t<li>' + metric + ': '
--- a/test-data/make_otu_heatmap/basic_heatmap.svg Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/make_otu_heatmap/basic_heatmap.svg Tue Oct 30 19:59:19 2018 -0400 @@ -5,183 +5,175 @@ <svg height="360pt" version="1.1" viewBox="0 0 360 360" width="360pt" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink"> <defs> <style type="text/css"> -*{stroke-linecap:butt;stroke-linejoin:round;} +*{stroke-linecap:butt;stroke-linejoin:round;stroke-miterlimit:100000;} </style> </defs> <g id="figure_1"> <g id="patch_1"> - <path d=" -M0 360 -L360 360 -L360 0 -L0 0 + <path d="M 0 360 +L 360 360 +L 360 0 +L 0 0 z " style="fill:#ffffff;"/> </g> <g id="axes_1"> <g id="patch_2"> - <path d=" -M42.5819 326.418 -L310.341 326.418 -L310.341 15.21 -L42.5819 15.21 + <path d="M 40.6975 325.6025 +L 309.498426 325.6025 +L 309.498426 15.21 +L 40.6975 15.21 z " style="fill:#ffffff;"/> </g> - <g clip-path="url(#pcf9eb7027b)"> - <image height="311.76" id="image210c0d0649" width="268.2" 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--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -1,4 +1,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -1,4 +1,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0: NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG + -#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B############################################# \ No newline at end of file +#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Sat Aug 05 07:28:39 2017 -0400 +++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq Tue Oct 30 19:59:19 2018 -0400 @@ -5,4 +5,4 @@ @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0: ACGTGTACCCAAA + -@CCFFFDEHHHGF \ No newline at end of file +@CCFFFDEHHHGF