changeset 7:9db0d2cf4451 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author iuc
date Thu, 05 Dec 2019 07:50:35 -0500
parents 8b42de6ad28a
children
files filter_otus_from_otu_table.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/filter_otus_from_otu_table.xml	Tue Oct 30 19:57:18 2018 -0400
+++ b/filter_otus_from_otu_table.xml	Thu Dec 05 07:50:35 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="qiime_filter_otus_from_otu_table" name="Filter OTUs from an OTU table" version="@WRAPPER_VERSION@.0">
+<tool id="qiime_filter_otus_from_otu_table" name="Filter OTUs from an OTU table" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
     <description> based on their observation counts or identifier (filter_otus_from_otu_table)</description>
     <macros>
         <import>macros.xml</import>
@@ -6,6 +6,7 @@
     <expand macro="requirements"/>
     <version_command>filter_otus_from_otu_table.py --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
+@MPLBACKEND@
 filter_otus_from_otu_table.py
     --input_fp '$input_fp'
     --output_fp '$output_fp'
@@ -65,7 +66,7 @@
             <conditional name="id_filtering_condition">
                 <param name="id_filtering_switch" value="no"/>
             </conditional>
-            <output name="output_fp" file="filter_otus_from_otu_table/filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="0" />
+            <output name="output_fp" file="filter_otus_from_otu_table/filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="200" />
         </test>
         <test>
             <param name="input_fp" value="filter_otus_from_otu_table/otu_table.biom" />
@@ -74,7 +75,7 @@
                 <param name="otu_ids_to_exclude_fp" value="filter_otus_from_otu_table/chimeric_otus.txt"/>
                 <param name="negate_ids_to_exclude" value="False"/>
             </conditional>
-            <output name="output_fp" file="filter_otus_from_otu_table/chimera_filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="0" />
+            <output name="output_fp" file="filter_otus_from_otu_table/chimera_filtered_otu_table.biom" ftype="biom1" compare="sim_size" delta="200" />
         </test>
         <test>
             <param name="input_fp" value="filter_otus_from_otu_table/otu_table.biom" />
@@ -83,7 +84,7 @@
                 <param name="otu_ids_to_exclude_fp" value="filter_otus_from_otu_table/chimeric_otus.txt"/>
                 <param name="negate_ids_to_exclude" value="True"/>
             </conditional>
-            <output name="output_fp" file="filter_otus_from_otu_table/chimera_picked_otu_table.biom" ftype="biom1" compare="sim_size" delta="0" />
+            <output name="output_fp" file="filter_otus_from_otu_table/chimera_picked_otu_table.biom" ftype="biom1" compare="sim_size" delta="200" />
         </test>
     </tests>
     <help><![CDATA[
--- a/macros.xml	Tue Oct 30 19:57:18 2018 -0400
+++ b/macros.xml	Thu Dec 05 07:50:35 2019 -0500
@@ -1,6 +1,8 @@
 <?xml version="1.0" ?>
 <macros>
+    <token name="@PROFILE@">18.01</token>
     <token name="@WRAPPER_VERSION@">1.9.1</token>
+    <token name="@MPLBACKEND@"><![CDATA[export MPLBACKEND=Agg && echo "backend:agg" > matplotlibrc &&]]></token>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">qiime</requirement>