Mercurial > repos > iuc > qiime_filter_samples_from_otu_table
annotate test-data/filter_taxa_from_otu_table/negative_taxa.biom @ 7:f9720c5ea41a draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
author | iuc |
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date | Thu, 05 Dec 2019 07:47:55 -0500 |
parents | 280e6285a591 |
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rev | line source |
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280e6285a591
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
iuc
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1 {"id": "No Table ID","format": "Biological Observation Matrix 1.0.0","format_url": "http://biom-format.org","matrix_type": "sparse","generated_by": "BIOM-Format 2.1.5","date": "2017-04-20T12:00:08.953521","type": "OTU table","matrix_element_type": "float","shape": [53, 9],"data": [[0,4,1.0],[1,8,1.0],[2,8,1.0],[3,3,2.0],[4,3,1.0],[5,8,2.0],[6,3,1.0],[7,7,2.0],[8,7,1.0],[9,7,1.0],[10,7,1.0],[11,0,6.0],[11,3,2.0],[11,7,3.0],[11,8,5.0],[12,2,1.0],[13,3,1.0],[14,6,1.0],[15,1,1.0],[16,5,1.0],[17,8,1.0],[18,0,1.0],[19,2,1.0],[20,7,1.0],[21,2,1.0],[22,0,1.0],[23,0,2.0],[23,4,4.0],[24,1,1.0],[25,3,1.0],[26,5,1.0],[27,5,1.0],[28,8,1.0],[29,1,5.0],[29,2,1.0],[29,4,17.0],[29,7,20.0],[30,7,1.0],[31,7,1.0],[32,0,1.0],[33,0,1.0],[33,8,2.0],[34,0,1.0],[35,4,5.0],[35,7,2.0],[36,8,1.0],[37,8,1.0],[38,5,1.0],[39,4,1.0],[40,6,1.0],[41,7,1.0],[42,7,1.0],[43,3,1.0],[44,7,1.0],[45,5,1.0],[46,3,1.0],[47,0,1.0],[48,7,1.0],[49,8,4.0],[50,4,1.0],[51,1,1.0],[52,1,1.0]],"rows": [{"id": "9", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "14", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "16", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "21", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "22", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Desulfovibrionales", "f__Desulfovibrionaceae"]}},{"id": "27", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__TM7", "c__TM7-3", "o__CW040", "f__F16"]}},{"id": "33", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "34", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "35", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "36", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "39", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "45", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Deferribacteres", "c__Deferribacteres", "o__Deferribacterales", "f__Deferribacteraceae"]}},{"id": "55", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "73", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "77", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "81", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "87", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Mollicutes", "o__RF39", "f__"]}},{"id": "103", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "108", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Deferribacteres", "c__Deferribacteres", "o__Deferribacterales", "f__Deferribacteraceae"]}},{"id": "115", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "123", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Mollicutes", "o__RF39", "f__"]}},{"id": "131", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "169", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "178", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "179", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "186", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "189", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "204", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "225", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "231", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "249", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "262", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "271", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "282", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Desulfovibrionales", "f__Desulfovibrionaceae"]}},{"id": "306", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "308", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Proteobacteria", "c__Epsilonproteobacteria", "o__Campylobacterales", "f__Helicobacteraceae"]}},{"id": "312", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "314", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "316", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "318", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "325", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "328", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "330", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Actinobacteria", "c__Actinobacteria", "o__Coriobacteriales", "f__Coriobacteriaceae"]}},{"id": "355", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "365", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "369", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "374", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "376", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "395", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Proteobacteria", "c__Deltaproteobacteria", "o__Desulfovibrionales", "f__Desulfovibrionaceae"]}},{"id": "407", "metadata": {"taxonomy": ["Root", "k__Bacteria", "p__Tenericutes", "c__Erysipelotrichi", "o__Erysipelotrichales", "f__Erysipelotrichaceae"]}},{"id": "410", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "416", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}},{"id": "417", "metadata": {"taxonomy": ["Root", "k__Bacteria"]}}],"columns": [{"id": "PC.636", "metadata": null},{"id": "PC.481", "metadata": null},{"id": "PC.354", "metadata": null},{"id": "PC.635", "metadata": null},{"id": "PC.593", "metadata": null},{"id": "PC.356", "metadata": null},{"id": "PC.355", "metadata": null},{"id": "PC.607", "metadata": null},{"id": "PC.634", "metadata": null}]} |