Mercurial > repos > iuc > qiime_jackknifed_beta_diversity
comparison jackknifed_beta_diversity.xml @ 7:9d06d3380f1d draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2019 07:38:12 -0500 |
| parents | 205f4c9739c0 |
| children |
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| 6:d865ba1d276e | 7:9d06d3380f1d |
|---|---|
| 1 <tool id="qiime_jackknifed_beta_diversity" name="Perform jackknifed UPGMA clustering" version="@WRAPPER_VERSION@.0"> | 1 <tool id="qiime_jackknifed_beta_diversity" name="Perform jackknifed UPGMA clustering" version="@WRAPPER_VERSION@.0" profile="@PROFILE@"> |
| 2 <description> and building jackknifed PCoA plots (jackknifed_beta_diversity)</description> | 2 <description> and building jackknifed PCoA plots (jackknifed_beta_diversity)</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 8 <regex match="VisibleDeprecationWarning" source="both" level="warning" description="VisibleDeprecationWarning on numpy for `rank`"/> | 8 <regex match="VisibleDeprecationWarning" source="both" level="warning" description="VisibleDeprecationWarning on numpy for `rank`"/> |
| 9 <regex match="RuntimeWarning: The result contains negative eigenvalues" source="both" level="warning" description="Presence of negative eigenvalues"/> | 9 <regex match="RuntimeWarning: The result contains negative eigenvalues" source="both" level="warning" description="Presence of negative eigenvalues"/> |
| 10 </stdio> | 10 </stdio> |
| 11 <version_command>jackknifed_beta_diversity.py --version</version_command> | 11 <version_command>jackknifed_beta_diversity.py --version</version_command> |
| 12 <command detect_errors="aggressive"><![CDATA[ | 12 <command detect_errors="aggressive"><![CDATA[ |
| 13 @MPLBACKEND@ | |
| 13 jackknifed_beta_diversity.py | 14 jackknifed_beta_diversity.py |
| 14 --otu_table_fp '$otu_table_fp' | 15 --otu_table_fp '$otu_table_fp' |
| 15 --mapping_fp '$mapping_fp' | 16 --mapping_fp '$mapping_fp' |
| 16 -o jackknifed_beta_diversity | 17 -o jackknifed_beta_diversity |
| 17 --seqs_per_sample '$seqs_per_sample' | 18 --seqs_per_sample '$seqs_per_sample' |