diff test-data/summarize_taxa_through_plots/without_mapping/log_20170501134810.txt @ 0:a3d1104d090c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/summarize_taxa_through_plots/without_mapping/log_20170501134810.txt	Thu May 18 09:28:39 2017 -0400
@@ -0,0 +1,42 @@
+Logging started at 13:48:10 on 01 May 2017
+QIIME version: 1.9.1
+
+qiime_config values:
+pick_otus_reference_seqs_fp	/Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
+sc_queue	all.q
+pynast_template_alignment_fp	/Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set_aligned/85_otus.pynast.fasta
+cluster_jobs_fp	start_parallel_jobs.py
+assign_taxonomy_reference_seqs_fp	/Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/rep_set/97_otus.fasta
+torque_queue	friendlyq
+jobs_to_start	1
+denoiser_min_per_core	50
+assign_taxonomy_id_to_taxonomy_fp	/Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/qiime_default_reference/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt
+temp_dir	/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/
+blastall_fp	blastall
+seconds_to_sleep	1
+
+parameter file values:
+
+Input file md5 sums:
+test-data/summarize_taxa_through_plots/otu_table.biom: dda91090fbdc0f69056852247bcd924f
+
+Executing commands.
+
+# Summarize Taxonomy command 
+summarize_taxa.py -i test-data/summarize_taxa_through_plots/otu_table.biom -o summarize_taxa_through_plots_without_mapping 
+
+Stdout:
+
+Stderr:
+
+# Plot Taxonomy Summary command 
+plot_taxa_summary.py -i summarize_taxa_through_plots_without_mapping/otu_table_L2.txt,summarize_taxa_through_plots_without_mapping/otu_table_L3.txt,summarize_taxa_through_plots_without_mapping/otu_table_L4.txt,summarize_taxa_through_plots_without_mapping/otu_table_L5.txt,summarize_taxa_through_plots_without_mapping/otu_table_L6.txt -o summarize_taxa_through_plots_without_mapping/taxa_summary_plots/ 
+
+Stdout:
+
+Stderr:
+/Users/bebatut/miniconda3/envs/qiime/lib/python2.7/site-packages/matplotlib/collections.py:590: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison
+  if self._edgecolors == str('face'):
+
+
+Logging stopped at 13:48:24 on 01 May 2017