Mercurial > repos > iuc > qiime_make_phylogeny
comparison macros.xml @ 3:dd1b6203414b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a831282140ce160035a4ce984f48cc20198ed0a1
| author | iuc |
|---|---|
| date | Thu, 22 Jun 2017 07:00:41 -0400 |
| parents | e82369a926e3 |
| children | 1042f194c3cd |
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| 2:b3ad44e46414 | 3:dd1b6203414b |
|---|---|
| 27 <when value="history"> | 27 <when value="history"> |
| 28 <param argument="--refseqs_fp" type="data" format="fasta" label="Reference sequences to search against"/> | 28 <param argument="--refseqs_fp" type="data" format="fasta" label="Reference sequences to search against"/> |
| 29 </when> | 29 </when> |
| 30 </conditional> | 30 </conditional> |
| 31 </xml> | 31 </xml> |
| 32 <xml name="assign_taxonomy_reference_source"> | |
| 33 <conditional name="references"> | |
| 34 <param name="source_selector" type="select" label="Select a reference sequence file from"> | |
| 35 <option value="cached">The local cache</option> | |
| 36 <option value="history">The active history</option> | |
| 37 </param> | |
| 38 <when value="cached"> | |
| 39 <param argument="--reference_seqs_fp" label="Reference sequences either used to generate a blast database (Blast) or used as training sequences for the selected classifier (RDP, Mothur)" type="select"> | |
| 40 <options from_data_table="qiime_rep_set"/> | |
| 41 </param> | |
| 42 </when> | |
| 43 <when value="history"> | |
| 44 <param argument="--reference_seqs_fp" type="data" format="fasta" label="Reference sequences to search against"/> | |
| 45 </when> | |
| 46 </conditional> | |
| 47 </xml> | |
| 32 <xml name="pick_otus_similarity"> | 48 <xml name="pick_otus_similarity"> |
| 33 <param argument="--similarity" type="float" value="0.97" label="Sequence similarity threshold"/> | 49 <param argument="--similarity" type="float" value="0.97" label="Sequence similarity threshold"/> |
| 34 </xml> | 50 </xml> |
| 35 <xml name="pick_otus_denovo_otu_id_prefix"> | 51 <xml name="pick_otus_denovo_otu_id_prefix"> |
| 36 <param argument="--denovo_otu_id_prefix" type="text" value="denovo" label="OTU identifier prefix for the de novo OTU pickers"/> | 52 <param argument="--denovo_otu_id_prefix" type="text" value="denovo" label="OTU identifier prefix for the de novo OTU pickers"/> |