changeset 5:7882388361e4 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
author iuc
date Tue, 30 Oct 2018 19:32:50 -0400 (2018-10-30)
parents bf3348cc35d5
children be533bd1ad65
files beta_diversity_through_plots_html_generation.py test-data/make_otu_heatmap/basic_heatmap.svg test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq
diffstat 10 files changed, 2989 insertions(+), 4564 deletions(-) [+]
line wrap: on
line diff
--- a/beta_diversity_through_plots_html_generation.py	Mon Oct 16 04:57:59 2017 -0400
+++ b/beta_diversity_through_plots_html_generation.py	Tue Oct 30 19:32:50 2018 -0400
@@ -21,7 +21,7 @@
 
         for directory in dir_list:
             regexp_result = re.search(
-                '([a-zA-Z\_]*)_emperor_pcoa_plot',
+                r'([a-zA-Z\_]*)_emperor_pcoa_plot',
                 directory)
             metric = regexp_result.group(1)
             s += '\t\t\t\t<li>' + metric + ': '
--- a/test-data/make_otu_heatmap/basic_heatmap.svg	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/make_otu_heatmap/basic_heatmap.svg	Tue Oct 30 19:32:50 2018 -0400
@@ -5,183 +5,175 @@
 <svg height="360pt" version="1.1" viewBox="0 0 360 360" width="360pt" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink">
  <defs>
   <style type="text/css">
-*{stroke-linecap:butt;stroke-linejoin:round;}
+*{stroke-linecap:butt;stroke-linejoin:round;stroke-miterlimit:100000;}
   </style>
  </defs>
  <g id="figure_1">
   <g id="patch_1">
-   <path d="
-M0 360
-L360 360
-L360 0
-L0 0
+   <path d="M 0 360 
+L 360 360 
+L 360 0 
+L 0 0 
 z
 " style="fill:#ffffff;"/>
   </g>
   <g id="axes_1">
    <g id="patch_2">
-    <path d="
-M42.5819 326.418
-L310.341 326.418
-L310.341 15.21
-L42.5819 15.21
+    <path d="M 40.6975 325.6025 
+L 309.498426 325.6025 
+L 309.498426 15.21 
+L 40.6975 15.21 
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 " style="fill:#ffffff;"/>
    </g>
-   <g clip-path="url(#pcf9eb7027b)">
-    <image height="311.76" id="image210c0d0649" width="268.2" x="42.581875" xlink:href="data:image/png;base64,
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--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un1.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0:
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+#1=DDFFFDDD@6@BBB8?B?BCBDBBDDCDCDD?BB79?ACC?+8?:8??B@@B#############################################
--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_1/fastqjoin.un2.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0:
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--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un1.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -1,4 +1,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 1:N:0:
 NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG
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--- a/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_with_barcode/forward_2/fastqjoin.un2.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -1,4 +1,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0:
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--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un1.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -5,4 +5,4 @@
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--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_1/fastqjoin.un2.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -5,4 +5,4 @@
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--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un1.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -5,4 +5,4 @@
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 NACGGGGGGGGCAAGCGTTGTTCGGAATTACTGGGCGTAAAGGGTTCGTAGGTGGCCTACTAAGTCAGACGAGAGCTCACTCAGCATATCTGGCGCACTG
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--- a/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq	Mon Oct 16 04:57:59 2017 -0400
+++ b/test-data/multiple_join_paired_ends/output_without_barcode/forward_2/fastqjoin.un2.fastq	Tue Oct 30 19:32:50 2018 -0400
@@ -5,4 +5,4 @@
 @HWI-ST753:99:C038WACXX:4:1101:1357:1989 2:N:0:
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