comparison plot_taxa_summary.xml @ 7:ab12aca3ede9 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c845cb240f57663cf1e2240c5c506ea0b294872c"

6:c6d84b3ad9db

<tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0">
    <description> based on taxonomy assignment (plot_taxa_summary)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <version_command>MPLBACKEND="Agg" plot_taxa_summary.py --version</version_command>
    <command detect_errors="aggressive"><![CDATA[
#set $chosen_chart_type = str( $chart_type ).split( "," )

## set matplotlib backend
export MPLBACKEND="Agg" &&
echo "backend:agg" > matplotlibrc &&

plot_taxa_summary.py
    --counts_fname '$counts_fname'
    --dir_path taxa_plots
    --labels '$labels'
    --num_categories '$num_categories'

7:ab12aca3ede9

<tool id="qiime_plot_taxa_summary" name="Make taxonomy summary charts" version="@WRAPPER_VERSION@.0" profile="@PROFILE@">
    <description> based on taxonomy assignment (plot_taxa_summary)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <version_command>MPLBACKEND="Agg" plot_taxa_summary.py --version</version_command>
    <command detect_errors="aggressive"><![CDATA[
#set $chosen_chart_type = str( $chart_type ).split( "," )
@MPLBACKEND@
plot_taxa_summary.py
    --counts_fname '$counts_fname'
    --dir_path taxa_plots
    --labels '$labels'
    --num_categories '$num_categories'