comparison upgma_cluster.xml @ 5:4e9b6a0fcb78 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380

4:d44bd2602944

<tool id="qiime_upgma_cluster" name="Build UPGMA tree" version="@WRAPPER_VERSION@.0">
    <description>comparing samples</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <version_command>upgma_cluster.py -v</version_command>
    <command detect_errors="aggressive"><![CDATA[
        mkdir input
        &&
        #for $i, $matrix in enumerate($input_path)
            cp '$matrix' 'input/dataset_$i' &&
        #end for
        upgma_cluster.py
            --input_path input
            --output_path output
    ]]></command>
    <inputs>
        <param argument="--input_path" type="data" format="txt" label="Distance matrix" multiple="true"/>
    </inputs>
    <outputs>
        <collection type="list" name="output_trees" label="${tool.name} on ${on_string}: UPGMA trees">
            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.tre" directory="output"/>
        </collection>

5:4e9b6a0fcb78

<tool id="qiime_upgma_cluster" name="Build a UPGMA tree" version="@WRAPPER_VERSION@.0">
    <description> comparing samples (upgma_cluster)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <version_command>upgma_cluster.py -v</version_command>
    <command detect_errors="aggressive"><![CDATA[
mkdir input
&&
#for $i, $matrix in enumerate($input_path)
    cp '$matrix' 'input/dataset_$i' &&
#end for
upgma_cluster.py
    --input_path input
    --output_path output
    ]]></command>
    <inputs>
        <param argument="--input_path" type="data" format="txt" multiple="true" label="Distance matrix"/>
    </inputs>
    <outputs>
        <collection type="list" name="output_trees" label="${tool.name} on ${on_string}: UPGMA trees">
            <discover_datasets pattern="(?P&lt;designation&gt;.*)\.tre" directory="output"/>
        </collection>