Mercurial > repos > iuc > qiime_upgma_cluster
comparison upgma_cluster.xml @ 5:4e9b6a0fcb78 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit 3b54163c4f7daff76fcc589c4a9057bb03904380
author | iuc |
---|---|
date | Sat, 05 Aug 2017 07:33:48 -0400 |
parents | e7324235f49e |
children | aae131716d22 |
comparison
equal
deleted
inserted
replaced
4:d44bd2602944 | 5:4e9b6a0fcb78 |
---|---|
1 <tool id="qiime_upgma_cluster" name="Build UPGMA tree" version="@WRAPPER_VERSION@.0"> | 1 <tool id="qiime_upgma_cluster" name="Build a UPGMA tree" version="@WRAPPER_VERSION@.0"> |
2 <description>comparing samples</description> | 2 <description> comparing samples (upgma_cluster)</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
7 <version_command>upgma_cluster.py -v</version_command> | 7 <version_command>upgma_cluster.py -v</version_command> |
8 <command detect_errors="aggressive"><![CDATA[ | 8 <command detect_errors="aggressive"><![CDATA[ |
9 mkdir input | 9 mkdir input |
10 && | 10 && |
11 #for $i, $matrix in enumerate($input_path) | 11 #for $i, $matrix in enumerate($input_path) |
12 cp '$matrix' 'input/dataset_$i' && | 12 cp '$matrix' 'input/dataset_$i' && |
13 #end for | 13 #end for |
14 upgma_cluster.py | 14 upgma_cluster.py |
15 --input_path input | 15 --input_path input |
16 --output_path output | 16 --output_path output |
17 ]]></command> | 17 ]]></command> |
18 <inputs> | 18 <inputs> |
19 <param argument="--input_path" type="data" format="txt" label="Distance matrix" multiple="true"/> | 19 <param argument="--input_path" type="data" format="txt" multiple="true" label="Distance matrix"/> |
20 </inputs> | 20 </inputs> |
21 <outputs> | 21 <outputs> |
22 <collection type="list" name="output_trees" label="${tool.name} on ${on_string}: UPGMA trees"> | 22 <collection type="list" name="output_trees" label="${tool.name} on ${on_string}: UPGMA trees"> |
23 <discover_datasets pattern="(?P<designation>.*)\.tre" directory="output"/> | 23 <discover_datasets pattern="(?P<designation>.*)\.tre" directory="output"/> |
24 </collection> | 24 </collection> |