Mercurial > repos > iuc > qiime_validate_mapping_file
comparison test-data/split_libraries/split_library_log @ 0:51ce498c97f4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
| author | iuc |
|---|---|
| date | Thu, 18 May 2017 09:29:50 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:51ce498c97f4 |
|---|---|
| 1 Number raw input seqs 8 | |
| 2 | |
| 3 Length outside bounds of 200 and 1000 0 | |
| 4 Num ambiguous bases exceeds limit of 6 0 | |
| 5 Missing Qual Score 0 | |
| 6 Mean qual score below minimum of 25 0 | |
| 7 Max homopolymer run exceeds limit of 6 0 | |
| 8 Num mismatches in primer exceeds limit of 0: 0 | |
| 9 | |
| 10 Sequence length details for all sequences passing quality filters: | |
| 11 Raw len min/max/avg 244.0/276.0/255.5 | |
| 12 Wrote len min/max/avg 211.0/243.0/222.5 | |
| 13 | |
| 14 Barcodes corrected/not 0/0 | |
| 15 Uncorrected barcodes will not be written to the output fasta file. | |
| 16 Corrected barcodes will be written with the appropriate barcode category. | |
| 17 Corrected but unassigned sequences will not be written unless --retain_unassigned_reads is enabled. | |
| 18 | |
| 19 Total valid barcodes that are not in mapping file 0 | |
| 20 Sequences associated with valid barcodes that are not in the mapping file will not be written. | |
| 21 | |
| 22 Barcodes in mapping file | |
| 23 Num Samples 3 | |
| 24 Sample ct min/max/mean: 2 / 4 / 2.67 | |
| 25 Sample Sequence Count Barcode | |
| 26 PC.634 4 ACAGAGTCGGCT | |
| 27 PC.354 2 AGCACGAGCCTA | |
| 28 PC.481 2 ACCAGCGACTAG | |
| 29 PC.593 0 AGCAGCACTTGT | |
| 30 PC.636 0 ACGGTGAGTGTC | |
| 31 PC.635 0 ACCGCAGAGTCA | |
| 32 PC.356 0 ACAGACCACTCA | |
| 33 PC.607 0 AACTGTGCGTAC | |
| 34 PC.355 0 AACTCGTCGATG | |
| 35 | |
| 36 Total number seqs written 8 |