Mercurial > repos > iuc > qualimap_bamqc
comparison test-data/rnaseq_qc_results_custom.txt @ 0:ac607906f10a draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"
author | iuc |
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date | Thu, 10 Oct 2019 17:42:04 -0400 |
parents | |
children | e7fd6754d093 |
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-1:000000000000 | 0:ac607906f10a |
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1 RNA-Seq QC report | |
2 ----------------------------------- | |
3 | |
4 >>>>>>> Input | |
5 | |
6 bam file = /tmp/tmp_CFvEQ/files/000/dataset_49.dat | |
7 gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat | |
8 counting algorithm = proportional | |
9 protocol = strand-specific-forward | |
10 | |
11 | |
12 >>>>>>> Reads alignment | |
13 | |
14 reads aligned (left/right) = 0 / 0 | |
15 read pairs aligned = 0 | |
16 total alignments = 101 | |
17 secondary alignments = 1 | |
18 non-unique alignments = 0 | |
19 aligned to genes = 46 | |
20 ambiguous alignments = 0 | |
21 no feature assigned = 55 | |
22 not aligned = 0 | |
23 | |
24 | |
25 >>>>>>> Reads genomic origin | |
26 | |
27 exonic = 46 (45.54%) | |
28 intronic = 0 (0%) | |
29 intergenic = 55 (54.46%) | |
30 overlapping exon = 0 (0%) | |
31 | |
32 | |
33 >>>>>>> Transcript coverage profile | |
34 | |
35 5' bias = NaN | |
36 3' bias = NaN | |
37 5'-3' bias = NaN | |
38 | |
39 | |
40 >>>>>>> Junction analysis | |
41 | |
42 reads at junctions = 53 | |
43 | |
44 CTTT : 47.17% | |
45 CCAC : 47.17% | |
46 GCAC : 1.89% | |
47 CTAC : 1.89% | |
48 GAAT : 1.89% |