Mercurial > repos > iuc > qualimap_bamqc

view test-data/rnaseq_qc_results_default.txt @ 1:4a89c6f84425 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit 08beeabf7a8e91d0e95f5cdb71249dd6efe2bd46"
author iuc
date Tue, 29 Oct 2019 09:14:20 -0400
parents ac607906f10a
children e7fd6754d093
line wrap: on
line source

RNA-Seq QC report
-----------------------------------

>>>>>>> Input

    bam file = /tmp/tmp_CFvEQ/files/000/dataset_1.dat
    gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat
    counting algorithm = uniquely-mapped-reads
    protocol = non-strand-specific


>>>>>>> Reads alignment

    reads aligned  = 100
    total alignments = 101
    secondary alignments = 1
    non-unique alignments = 2
    aligned to genes  = 54
    ambiguous alignments = 0
    no feature assigned = 45
    not aligned = 0
    SSP estimation (fwd/rev) = 0.59 / 0.41


>>>>>>> Reads genomic origin

    exonic =  54 (54.55%)
    intronic = 0 (0%)
    intergenic = 45 (45.45%)
    overlapping exon = 0 (0%)


>>>>>>> Transcript coverage profile

    5' bias = NaN
    3' bias = NaN
    5'-3' bias = NaN


>>>>>>> Junction analysis

    reads at junctions = 52

    CTTT : 48.08%
    CCAC : 48.08%
    GCAC : 1.92%
    CTAC : 1.92%