comparison test-data/rnaseq_qc_results_custom.txt @ 0:e020be4f281b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"
author iuc
date Thu, 10 Oct 2019 17:40:46 -0400
parents
children d696cf0a9622
comparison
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-1:000000000000 0:e020be4f281b
1 RNA-Seq QC report
2 -----------------------------------
3
4 >>>>>>> Input
5
6 bam file = /tmp/tmp_CFvEQ/files/000/dataset_49.dat
7 gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat
8 counting algorithm = proportional
9 protocol = strand-specific-forward
10
11
12 >>>>>>> Reads alignment
13
14 reads aligned (left/right) = 0 / 0
15 read pairs aligned = 0
16 total alignments = 101
17 secondary alignments = 1
18 non-unique alignments = 0
19 aligned to genes = 46
20 ambiguous alignments = 0
21 no feature assigned = 55
22 not aligned = 0
23
24
25 >>>>>>> Reads genomic origin
26
27 exonic = 46 (45.54%)
28 intronic = 0 (0%)
29 intergenic = 55 (54.46%)
30 overlapping exon = 0 (0%)
31
32
33 >>>>>>> Transcript coverage profile
34
35 5' bias = NaN
36 3' bias = NaN
37 5'-3' bias = NaN
38
39
40 >>>>>>> Junction analysis
41
42 reads at junctions = 53
43
44 CTTT : 47.17%
45 CCAC : 47.17%
46 GCAC : 1.89%
47 CTAC : 1.89%
48 GAAT : 1.89%