Mercurial > repos > iuc > qualimap_counts
comparison test-data/rnaseq_qc_results_custom.txt @ 0:e020be4f281b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"
| author | iuc |
|---|---|
| date | Thu, 10 Oct 2019 17:40:46 -0400 |
| parents | |
| children | d696cf0a9622 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:e020be4f281b |
|---|---|
| 1 RNA-Seq QC report | |
| 2 ----------------------------------- | |
| 3 | |
| 4 >>>>>>> Input | |
| 5 | |
| 6 bam file = /tmp/tmp_CFvEQ/files/000/dataset_49.dat | |
| 7 gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat | |
| 8 counting algorithm = proportional | |
| 9 protocol = strand-specific-forward | |
| 10 | |
| 11 | |
| 12 >>>>>>> Reads alignment | |
| 13 | |
| 14 reads aligned (left/right) = 0 / 0 | |
| 15 read pairs aligned = 0 | |
| 16 total alignments = 101 | |
| 17 secondary alignments = 1 | |
| 18 non-unique alignments = 0 | |
| 19 aligned to genes = 46 | |
| 20 ambiguous alignments = 0 | |
| 21 no feature assigned = 55 | |
| 22 not aligned = 0 | |
| 23 | |
| 24 | |
| 25 >>>>>>> Reads genomic origin | |
| 26 | |
| 27 exonic = 46 (45.54%) | |
| 28 intronic = 0 (0%) | |
| 29 intergenic = 55 (54.46%) | |
| 30 overlapping exon = 0 (0%) | |
| 31 | |
| 32 | |
| 33 >>>>>>> Transcript coverage profile | |
| 34 | |
| 35 5' bias = NaN | |
| 36 3' bias = NaN | |
| 37 5'-3' bias = NaN | |
| 38 | |
| 39 | |
| 40 >>>>>>> Junction analysis | |
| 41 | |
| 42 reads at junctions = 53 | |
| 43 | |
| 44 CTTT : 47.17% | |
| 45 CCAC : 47.17% | |
| 46 GCAC : 1.89% | |
| 47 CTAC : 1.89% | |
| 48 GAAT : 1.89% |