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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"
author iuc
date Thu, 10 Oct 2019 17:40:15 -0400
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RNA-Seq QC report
-----------------------------------

>>>>>>> Input

    bam file = /tmp/tmp_CFvEQ/files/000/dataset_49.dat
    gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat
    counting algorithm = proportional
    protocol = strand-specific-forward


>>>>>>> Reads alignment

    reads aligned (left/right) = 0 / 0
    read pairs aligned  = 0
    total alignments = 101
    secondary alignments = 1
    non-unique alignments = 0
    aligned to genes  = 46
    ambiguous alignments = 0
    no feature assigned = 55
    not aligned = 0


>>>>>>> Reads genomic origin

    exonic =  46 (45.54%)
    intronic = 0 (0%)
    intergenic = 55 (54.46%)
    overlapping exon = 0 (0%)


>>>>>>> Transcript coverage profile

    5' bias = NaN
    3' bias = NaN
    5'-3' bias = NaN


>>>>>>> Junction analysis

    reads at junctions = 53

    CTTT : 47.17%
    CCAC : 47.17%
    GCAC : 1.89%
    CTAC : 1.89%
    GAAT : 1.89%