view test-data/rnaseq_qc_results_default.txt @ 2:e38af83df163 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit 3c0443b29b1fac5ec193912b0c03a79d75ba731a"

RNA-Seq QC report
-----------------------------------

>>>>>>> Input

    bam file = /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmp7dpdo71_/files/7/7/6/dataset_776481e3-00ec-47dd-8143-2213c9f06699.dat
    gff file = features.gtf
    counting algorithm = uniquely-mapped-reads
    protocol = non-strand-specific
    5'-3' bias region size = 100
    5'-3' bias number of top transcripts = 1000


>>>>>>> Reads alignment

    reads aligned  = 100
    total alignments = 101
    secondary alignments = 1
    non-unique alignments = 2
    aligned to genes  = 54
    ambiguous alignments = 0
    no feature assigned = 45
    not aligned = 0
    SSP estimation (fwd/rev) = 0.59 / 0.41


>>>>>>> Reads genomic origin

    exonic =  54 (54.55%)
    intronic = 0 (0%)
    intergenic = 45 (45.45%)
    overlapping exon = 0 (0%)


>>>>>>> Transcript coverage profile

    5' bias = NaN
    3' bias = NaN
    5'-3' bias = NaN


>>>>>>> Junction analysis

    reads at junctions = 52

    CTTT : 48.08%
    CCAC : 48.08%
    GCAC : 1.92%
    CTAC : 1.92%